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[179012_at]

Description K08E4.5 /REP_DB=WormBase Gene ID /WP=CE03465 /TR=Q21335 /GB=CAA92682.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 10      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 16
(-3)
A 		21.3
(-2.4)
A 		15.5
(-3)
A 		77.6
(3)
A 		62
B 31
(-0.8)
A 		20.8
(-2.2)
A 		14.9
(-3)
A 		59.8
(3)
M 		45
C 3.8
(-3)
A 		27
(-1.8)
A 		13.5
(-2.5)
A 		121.2
(3)
P 		117
avr 16.9
(-2.8) 		23
(-2.3) 		14.6
(-3) 		86.2
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 49.6
(-0)
A 		1.3
(-3)
A 		43.7
(-0.4)
P 		20.2
(-1.8)
A 		39.2
(-0.7)
A 		99.4
(3)
P 		98
B 25.3
(-2.5)
A 		36.2
(-1.7)
A 		18.3
(-3)
A 		65.5
(0.4)
A 		75.5
(1.1)
P 		101.6
(3)
P 		83
C 16.6
(-2.2)
A 		56.2
(0.8)
P 		5.7
(-3)
A 		35.8
(-0.7)
A 		52.8
(0.5)
P 		85.8
(3)
P 		80
avr 30.5
(-2.4) 		31.2
(-2.3) 		22.6
(-3) 		40.5
(-1.5) 		55.8
(-0.3) 		95.6
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 5.8
(-1.5)
A 		4.6
(-2.5)
A 		4
(-3)
A 		11.4
(3)
A 		7
B 9.9
(1.2)
A 		5.1
(-2)
A 		3.5
(-3)
A 		12.7
(3)
M 		9
C 1.3
(-3)
A 		7.8
(-1)
A 		4.7
(-1.9)
A 		20.4
(3)
P 		19
avr 5.7
(-2.1) 		5.8
(-2) 		4.1
(-3) 		14.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 9.1
(-0.8)
A 		0.5
(-3)
A 		9.5
(-0.7)
P 		5.1
(-1.8)
A 		11.8
(-0.1)
A 		24.2
(3)
P 		24
B 8.8
(-2.2)
A 		12
(-1.6)
A 		4.4
(-3)
A 		17.4
(-0.7)
A 		30.7
(1.7)
P 		37.9
(3)
P 		34
C 6.2
(-2)
A 		17.2
(0.5)
P 		1.5
(-3)
A 		7.2
(-1.7)
A 		17.1
(0.4)
P 		28.7
(3)
P 		27
avr 8
(-2.3) 		9.9
(-1.9) 		5.1
(-3) 		9.9
(-1.9) 		19.9
(0.5) 		30.3
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179012_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9693
Sequence Type Exemplar sequence
Representative Public ID K08E4.5 NCBI
Target Description K08E4.5 /REP_DB=WormBase Gene ID /WP=CE03465 /TR=Q21335 /GB=CAA92682.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069886 NCBI Caenorhabditis elegans K08E4.5 (K08E4.5) mRNA, complete cds. 11/11 None
SNAP00000000851 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12075788:12076885:1 11/11 None
GENEFINDER00000000859 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12075788:12076885:1 11/11 None
K08E4.5 ENSEMBL cdna:known chromosome:CEL140:IV:12073043:12076885:1 gene:K08E4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12073048-12076891(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-37
Ensembl K08E4.5
Entrez Gene 187161 Entrez gene
SwissProt Q21335 EMBL-EBI
WormBase CE03465 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92682 Hypothetical protein K08E4.5 [Caenorhabditis elegans] ref|NP_502287.1| K08E4.5 [Caenorhabditis elegans] 0.0
blast CAA92682 Hypothetical protein K08E4.5 [Caenorhabditis elegans] ref|NP_502287.1| K08E4.5 [Caenorhabditis elegans] 1.0E-180
blast CAE62173 Hypothetical protein CBG06220 [Caenorhabditis briggsae] 1.0E-136
blast AAY43990 Hypothetical protein Y59E9AL.8 [Caenorhabditis elegans] ref|NP_001023539.1| Y59E9AL.8 [Caenorhabditis elegans] 2.0E-73
blast AAY43990 Hypothetical protein Y59E9AL.8 [Caenorhabditis elegans] ref|NP_001023539.1| Y59E9AL.8 [Caenorhabditis elegans] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.2E-27
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.2E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502287.1 6 4-26,39-61,88-105,117-139,180-202,215-237
K08E4.5 6 4-26,39-61,88-105,117-139,180-202,215-237
Sequence
Target Sequence 
>C. ELEGANS:179012_AT
ggattacttcgatggagttctccttgttgagaacaaaaagatttacgtccaaaaaagata
cctggcaacgaagtcgacttatttttggaacattttcttcggtgatttcaaggagaagga
gcaagaagccgtcgaaatccctggagttaaatacgatgacgtcattcaatttctgaactt
cattcaccacaccgacagtcaaattaatattgaaacgattgagaacatgatggtacttgc
tgatttattcctaattgattgtcttatgtgctgttgtgagaaaattctcatcaaagcgga
ctcggtcaatttggcgaaaaaattgatttgggctgaacgatttgctttgaatgaattgat
ggatcattgtctcgacggtttcaagaagatgcaagattttgtggagttcagaaagaatga
gttctatgctggagtctccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTACTTCGATGGAGTTCTCCTT 531 507 1419 Antisense
AAGATACCTGGCAACGAAGTCGACT 580 153 1473 Antisense
GGAACATTTTCTTCGGTGATTTCAA 454 529 1505 Antisense
ATTTCTGAACTTCATTCACCACACC 13 17 1587 Antisense
GAGAACATGATGGTACTTGCTGATT 149 393 1639 Antisense
ATTGATTGTCTTATGTGCTGTTGTG 284 5 1672 Antisense
AATTCTCATCAAAGCGGACTCGGTC 586 175 1701 Antisense
AGCGGACTCGGTCAATTTGGCGAAA 443 79 1713 Antisense
GATTTGGGCTGAACGATTTGCTTTG 216 425 1743 Antisense
GATGGATCATTGTCTCGACGGTTTC 332 407 1776 Antisense
TGAGTTCTATGCTGGAGTCTCCGAT 134 569 1836 Antisense
Sequence Source Affymetrix Proprietary Database