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[179011_at]

Description K08E4.4 /REP_DB=WormBase Gene ID /WP=CE03464 /TR=Q21332 /GB=CAA92679.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 6.8
(-2.7)
A 		4.7
(-3)
A 		5.6
(-2.9)
A 		52.6
(3)
A 		48
B 2.8
(0.5)
A 		3
(1.2)
A 		1.8
(-3)
A 		3.5
(3)
A 		2
C 3
(-2.9)
A 		2.3
(-2.9)
A 		1.6
(-3)
A 		66
(3)
A 		64
avr 4.2
(-2.8) 		3.3
(-3) 		3
(-3) 		40.7
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.2
(-2.9)
A 		12.7
(-0.1)
A 		24.4
(3)
A 		1.9
(-3)
A 		9.4
(-1)
A 		3.5
(-2.6)
A 		23
B 3.9
(-2.4)
A 		3.8
(-2.4)
A 		22.8
(3)
A 		15.2
(0.8)
A 		1.7
(-3)
A 		4.8
(-2.1)
A 		21
C 4.8
(-2.5)
A 		5.7
(-2.2)
A 		3.9
(-2.8)
A 		3.4
(-3)
A 		20.6
(3)
A 		3.7
(-2.9)
A 		17
avr 3.6
(-3) 		7.4
(-1.3) 		17
(3) 		6.8
(-1.6) 		10.6
(0.1) 		4
(-2.8) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.5
(-1.7)
A 		1
(-3)
A 		1.5
(-2.6)
A 		7.7
(3)
A 		7
B 0.9
(3)
A 		0.7
(0.6)
A 		0.4
(-3)
A 		0.8
(1.8)
A 		1
C 1
(-2.8)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		11.1
(3)
A 		11
avr 1.5
(-2.3) 		0.8
(-3) 		0.8
(-3) 		6.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-3)
A 		4.5
(2)
A 		5.3
(3)
A 		0.5
(-2.9)
A 		2.8
(-0.1)
A 		0.9
(-2.4)
A 		5
B 1.4
(-2.1)
A 		1.2
(-2.4)
A 		5.5
(3)
A 		4
(1.1)
A 		0.7
(-3)
A 		1.8
(-1.6)
A 		5
C 1.8
(-1.9)
A 		1.7
(-2)
A 		1
(-2.7)
A 		0.7
(-3)
A 		6.7
(3)
A 		1.2
(-2.5)
A 		6
avr 1.2
(-3) 		2.5
(-0.1) 		3.9
(3) 		1.7
(-1.9) 		3.4
(1.9) 		1.3
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9502
Sequence Type Exemplar sequence
Representative Public ID K08E4.4 NCBI
Target Description K08E4.4 /REP_DB=WormBase Gene ID /WP=CE03464 /TR=Q21332 /GB=CAA92679.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069885 NCBI Caenorhabditis elegans K08E4.4 (K08E4.4) mRNA, complete cds. 11/11 None
K08E4.4 ENSEMBL cdna:known chromosome:CEL140:IV:12066543:12066855:-1 gene:K08E4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12066548-12066861(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08E4.4
Entrez Gene 187160 Entrez gene
SwissProt Q21332 EMBL-EBI
WormBase CE03464 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92679 Hypothetical protein K08E4.4 [Caenorhabditis elegans] ref|NP_502286.1| K08E4.4 [Caenorhabditis elegans] 3.0E-32
Sequence
Target Sequence 
>C. ELEGANS:179011_AT
gtttctcggaaatagtgaacaccctggagacttattaactcaaacaagtaaatgtgagtg
ccaactcgcatctgtttacgggaacggaagagttccggtgaaaaacaaaaaagcgacaaa
tgcctattttcaacagagcattccttcgtggtcagacacactccggatgacgcgacaaaa
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCTCGGAAATAGTGAACACCCT 280 449 36 Antisense
GTGAACACCCTGGAGACTTATTAAC 325 481 50 Antisense
CACCCTGGAGACTTATTAACTCAAA 310 199 55 Antisense
ATGTGAGTGCCAACTCGCATCTGTT 464 49 87 Antisense
CCAACTCGCATCTGTTTACGGGAAC 409 275 96 Antisense
GCATCTGTTTACGGGAACGGAAGAG 206 307 103 Antisense
AAAGCGACAAATGCCTATTTTCAAC 544 123 145 Antisense
GCCTATTTTCAACAGAGCATTCCTT 33 283 157 Antisense
AACAGAGCATTCCTTCGTGGTCAGA 314 137 167 Antisense
TGGTCAGACACACTCCGGATGACGC 81 551 184 Antisense
CACACTCCGGATGACGCGACAAAAT 388 193 192 Antisense
Sequence Source Affymetrix Proprietary Database