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[179010_at]

Description ZK795.2 /REP_DB=WormBase Gene ID /WP=CE18463 /TR=O62520 /GB=CAB05843.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 3.5
(-3)
A 		3.6
(-3)
A 		38.4
(-0)
A 		74.3
(3)
A 		71
B 3.9
(-3)
A 		40.9
(3)
A 		20.7
(-0.3)
A 		33.3
(1.8)
A 		37
C 26.6
(0.5)
A 		3.5
(-3)
A 		43.5
(3)
A 		10.2
(-2)
A 		40
avr 11.3
(-3) 		16
(-2) 		34.2
(1.9) 		39.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 40.1
(-0)
A 		10.4
(-3)
A 		32.1
(-0.8)
A 		34
(-0.6)
A 		59
(1.9)
A 		70.1
(3)
A 		60
B 3.2
(-3)
A 		14
(-2)
A 		25.2
(-1)
A 		50.8
(1.3)
A 		70.4
(3)
P 		50.7
(1.2)
A 		67
C 5.6
(-3)
A 		45.7
(0.8)
A 		56.6
(1.9)
A 		11.1
(-2.5)
A 		68.5
(3)
A 		61.2
(2.3)
P 		63
avr 16.3
(-3) 		23.4
(-2.1) 		38
(-0.4) 		32
(-1.1) 		66
(3) 		60.7
(2.4) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.3
(-2.7)
A 		0.8
(-3)
A 		10
(2.5)
A 		10.9
(3)
A 		10
B 1.2
(-3)
A 		10.1
(3)
A 		4.8
(-0.6)
A 		7.1
(1)
A 		9
C 8.8
(0.3)
A 		1
(-3)
A 		15.2
(3)
A 		1.7
(-2.7)
A 		14
avr 3.8
(-3) 		4
(-2.8) 		10
(3) 		6.6
(-0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 7.4
(-1.4)
A 		3.7
(-3)
A 		7
(-1.6)
A 		8.6
(-0.9)
A 		17.8
(3)
A 		17.1
(2.7)
A 		14
B 1.1
(-3)
A 		4.7
(-2.2)
A 		6.1
(-1.9)
A 		13.4
(-0.3)
A 		28.6
(3)
P 		18.9
(0.9)
A 		28
C 2.1
(-3)
A 		13.9
(0.5)
A 		14.4
(0.7)
A 		2.2
(-3)
A 		22.2
(3)
A 		20.5
(2.5)
P 		20
avr 3.5
(-3) 		7.4
(-1.8) 		9.2
(-1.2) 		8.1
(-1.6) 		22.9
(3) 		18.8
(1.7) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9535
Sequence Type Exemplar sequence
Representative Public ID ZK795.2 NCBI
Target Description ZK795.2 /REP_DB=WormBase Gene ID /WP=CE18463 /TR=O62520 /GB=CAB05843.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070002 NCBI Caenorhabditis elegans ZK795.2 (ZK795.2) mRNA, complete cds. 11/11 None
GENEFINDER00000033766 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12555066:12558897:-1 9/11 None
ZK795.2 ENSEMBL cdna:known chromosome:CEL140:IV:12557841:12558904:-1 gene:ZK795.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033763 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12557846-12558903(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK795.2
Entrez Gene 178206 Entrez gene
SwissProt O62520 EMBL-EBI
WormBase CE18463 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05843 Hypothetical protein ZK795.2 [Caenorhabditis elegans] ref|NP_502403.1| ZK795.2 [Caenorhabditis elegans] 2.0E-94
blast CAB05843 Hypothetical protein ZK795.2 [Caenorhabditis elegans] ref|NP_502403.1| ZK795.2 [Caenorhabditis elegans] 1.0E-71
blast CAE67951 Hypothetical protein CBG13554 [Caenorhabditis briggsae] 8.0E-37
blast CAE67951 Hypothetical protein CBG13554 [Caenorhabditis briggsae] 2.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033766 1 191-213
Sequence
Target Sequence 
>C. ELEGANS:179010_AT
attggtttcttactgttcttggctataagcccatgtcattctcaaagtggttcactttcc
ggttcaggtgcaattaagatggtcgtgatggggaaggacactgatgtcgcctggcaaaag
acaattgacgggattgccttgtacattgcaaagcatcaggtgaaatctccgcaaatattc
gttcatgagaacggaagtatttgcgaattcatcggaggtgtcgatagatcaaagatgcga
gccgacttcattctggttatcaaaaaacataccagccaaaaattgaagtgtgatcctgag
tggggacgtcaaagttttggggttttgaatatcgaaaagtacccaactttgtcccaaact
gatgaagatttggctttcaccgcaaaggtaaaaattttatttgaaaaatcacaaaatgca
agtgagctctaccaaaaaaagtgtagttctcctctagtgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGTTTCTTACTGTTCTTGGCTA 429 3 25 Antisense
GGCTATAAGCCCATGTCATTCTCAA 582 537 45 Antisense
GTTCACTTTCCGGTTCAGGTGCAAT 16 445 74 Antisense
GGGAAGGACACTGATGTCGCCTGGC 222 491 115 Antisense
TTGACGGGATTGCCTTGTACATTGC 562 703 149 Antisense
AAATCTCCGCAAATATTCGTTCATG 152 119 187 Antisense
AGCCGACTTCATTCTGGTTATCAAA 624 83 264 Antisense
GTGTGATCCTGAGTGGGGACGTCAA 548 487 312 Antisense
TACCCAACTTTGTCCCAAACTGATG 320 641 364 Antisense
GAAGATTTGGCTTTCACCGCAAAGG 673 337 388 Antisense
AAAGTGTAGTTCTCCTCTAGTGCAA 477 119 462 Antisense
Sequence Source Affymetrix Proprietary Database