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[179009_at]

Description C26E1.1 /REP_DB=WormBase Gene ID /WP=CE08400 /TR=O17604 /GB=CAB02781.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 2.4
(-3)
A 		8
(-1.3)
A 		22.4
(3)
A 		6.9
(-1.7)
A 		20
B 7.2
(-3)
A 		8.2
(-2.8)
A 		28.6
(1)
A 		39.6
(3)
A 		32
C 3.9
(-2.9)
A 		16.8
(-0.5)
A 		3.1
(-3)
A 		35.9
(3)
A 		33
avr 4.5
(-3) 		11
(-1.3) 		18
(0.5) 		27.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.1
(-3)
A 		2.7
(-2.4)
A 		7.9
(2.5)
A 		8.4
(3)
A 		3
(-2.1)
A 		6.1
(0.8)
A 		6
B 9.6
(2.6)
A 		3.8
(-2.4)
A 		4.3
(-2)
A 		10.1
(3)
A 		4.2
(-2.1)
A 		3.1
(-3)
A 		7
C 30.6
(3)
A 		8.9
(-1.7)
A 		4.2
(-2.7)
A 		22.1
(1.2)
A 		2.9
(-3)
A 		7
(-2.1)
A 		28
avr 14.1
(3) 		5.1
(-2) 		5.5
(-1.8) 		13.5
(2.7) 		3.4
(-3) 		5.4
(-1.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		1.7
(-2)
A 		5.9
(3)
A 		1
(-2.9)
A 		5
B 2.3
(-2.7)
A 		2
(-3)
A 		6.6
(1.3)
A 		8.4
(3)
A 		6
C 1.3
(-2.8)
A 		4.8
(1.5)
A 		1.1
(-3)
A 		6
(3)
A 		5
avr 1.5
(-3) 		2.8
(-0.8) 		4.5
(2) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1
(-0.9)
A 		1.7
(1.6)
A 		2.1
(3)
A 		0.9
(-1.2)
A 		1.5
(0.9)
A 		2
B 3.3
(3)
A 		1.3
(-2.2)
A 		1
(-3)
A 		2.7
(1.4)
A 		1.7
(-1.2)
A 		1.1
(-2.7)
A 		2
C 11.4
(3)
A 		2.7
(-2)
A 		1.1
(-2.9)
A 		4.4
(-1)
A 		0.9
(-3)
A 		2.3
(-2.2)
A 		11
avr 5
(3) 		1.7
(-2.2) 		1.3
(-2.8) 		3.1
(0) 		1.2
(-3) 		1.6
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13299
Sequence Type Exemplar sequence
Representative Public ID C26E1.1 NCBI
Target Description C26E1.1 /REP_DB=WormBase Gene ID /WP=CE08400 /TR=O17604 /GB=CAB02781.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073893 NCBI Caenorhabditis elegans C26E1.1 (C26E1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000016624 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13298481:13300642:1 11/11 None
C26E1.1 ENSEMBL cdna:known chromosome:CEL140:V:13300112:13300642:1 gene:C26E1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13300111-13300642(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26E1.1
Entrez Gene 182939 Entrez gene
SwissProt O17604 EMBL-EBI
WormBase CE08400 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02781 Hypothetical protein C26E1.1 [Caenorhabditis elegans] ref|NP_506294.1| C26E1.1 [Caenorhabditis elegans] 9.0E-84
blast CAB02781 Hypothetical protein C26E1.1 [Caenorhabditis elegans] ref|NP_506294.1| C26E1.1 [Caenorhabditis elegans] 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:179009_AT
cactgttcttggtgtcagccattgctggattcactctcaaaagaaagttgttggtatctc
aattttcaatctgtggatgagtctcaattctacgacgaaacgtactttgcatctccaaaa
aataaaactccgagggtttctggaaaacttaaagagaagcttcttcagtttgtcaagact
cctgaagatttggatcgtccccgcaaaagagccatcatacatatttgtaggagaattaaa
aaaataaccggacaagacattgatccagaatacatcagcaaattgttgtatggattgaaa
agagcaagacgtgacaagtttcgaaagattaatcgagaaatttttcgtgggctgaactgg
gatttcactcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTGTTCTTGGTGTCAGCCATTGC 661 195 43 Antisense
CCATTGCTGGATTCACTCTCAAAAG 297 269 61 Antisense
AAAGTTGTTGGTATCTCAATTTTCA 677 121 86 Antisense
GGATGAGTCTCAATTCTACGACGAA 474 513 117 Antisense
ACGACGAAACGTACTTTGCATCTCC 484 93 134 Antisense
GCTTCTTCAGTTTGTCAAGACTCCT 353 305 201 Antisense
GTCCCCGCAAAAGAGCCATCATACA 590 475 239 Antisense
AATAACCGGACAAGACATTGATCCA 44 151 285 Antisense
GAGCAAGACGTGACAAGTTTCGAAA 174 391 344 Antisense
GAAATTTTTCGTGGGCTGAACTGGG 687 361 379 Antisense
GGGCTGAACTGGGATTTCACTCAAT 667 491 391 Antisense
Sequence Source Affymetrix Proprietary Database