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[179008_at]

Description C09G1.2 /REP_DB=WormBase Gene ID /WP=CE02127 /TR=Q17863 /GB=CAA90539.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 26      6grp_total > 92      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 49.1
(-3)
P 		64.1
(3)
M 		49.4
(-2.9)
P 		59.2
(1)
P 		15
B 73.6
(3)
P 		49.6
(-0.1)
P 		26.9
(-3)
A 		42.1
(-1)
P 		47
C 48.3
(2)
P 		46.1
(1.4)
P 		31.6
(-3)
P 		51.6
(3)
A 		20
avr 57
(3) 		53.3
(1.9) 		36
(-3) 		51
(1.3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 57.3
(-0.2)
P 		44.9
(-1.8)
P 		35.2
(-3)
P 		41.9
(-2.2)
P 		83.4
(3)
P 		40.2
(-2.4)
A 		48
B 37.5
(0.6)
P 		39.2
(3)
P 		35.5
(-2.3)
A 		37.1
(0)
P 		38.3
(1.7)
P 		35
(-3)
P 		4
C 31
(-2.1)
A 		52.7
(3)
P 		30.7
(-2.2)
P 		51.2
(2.6)
P 		29.9
(-2.4)
A 		27.2
(-3)
A 		26
avr 41.9
(-0.1) 		45.6
(1.2) 		33.8
(-3) 		43.4
(0.4) 		50.5
(3) 		34.1
(-2.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.9
(3)
P 		13.9
(0.4)
M 		12.9
(-0.3)
P 		8.7
(-3)
P 		9
B 23.5
(3)
P 		12.2
(-0.9)
P 		6.2
(-3)
A 		9
(-2)
P 		17
C 16
(3)
P 		13.3
(0.8)
P 		11
(-1.1)
P 		8.7
(-3)
A 		7
avr 19.1
(3) 		13.1
(-0.5) 		10
(-2.3) 		8.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.6
(-2)
P 		16
(-0.2)
P 		7.7
(-3)
P 		10.6
(-2)
P 		25.2
(3)
P 		9.8
(-2.3)
A 		18
B 13.1
(0.9)
P 		13.1
(0.9)
P 		8.6
(-3)
A 		9.8
(-2)
P 		15.5
(3)
P 		13
(0.8)
P 		7
C 11.5
(-0.3)
A 		16.1
(3)
P 		7.8
(-3)
P 		10.3
(-1.2)
P 		9.7
(-1.6)
A 		9.1
(-2.1)
A 		8
avr 11.7
(-0.5) 		15.1
(1.8) 		8
(-3) 		10.2
(-1.5) 		16.8
(3) 		10.6
(-1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17747
Sequence Type Exemplar sequence
Representative Public ID C09G1.2 NCBI
Target Description C09G1.2 /REP_DB=WormBase Gene ID /WP=CE02127 /TR=Q17863 /GB=CAA90539.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078218(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078218 NCBI Caenorhabditis elegans C09G1.2 (C09G1.2) mRNA, complete cds. 11/11 None
C09G1.2 ENSEMBL cdna:known chromosome:CEL140:X:15978255:15982515:-1 gene:C09G1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010245 8/11 Cross Hyb Matching Probes None
SNAP00000010243 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15978254-15982515(-) 98.45 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G1.2
Entrez Gene 182459 Entrez gene
SwissProt Q17863 EMBL-EBI
WormBase CE02127 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90539 Hypothetical protein C09G1.2 [Caenorhabditis elegans] ref|NP_510619.1| C09G1.2 [Caenorhabditis elegans] 0.0
blast AAA50738 Hypothetical protein D1044.6 [Caenorhabditis elegans] ref|NP_498184.2| D1044.6 [Caenorhabditis elegans] sp|P41954|YLK6_CAEEL Hypothetical protein D1044.6 in chromosome III 8.0E-13
Sequence
Target Sequence 
>C. ELEGANS:179008_AT
aaaagatttcaaccacttcactgtgaaaaagaaagaggaatgtttaagtttgtcttttgg
ttttattgctcttccaatcaaaaaacggcgcccattttttgaagggcagaataatagtat
agaattaaaaggaactgcaactcagatcgaaagacaatccgtttcatcggaggtgcatat
ttccaattaccaaagcacacccatgaagaacaacggccgaggtgggcaaaactctttagg
cttcaatgatcatccaattaaaataaattcatccgaagaacaactctccggaacacaaaa
atcccatccaatggaaaacggttttgttactaccactgtaacaagccccgaacggagtgg
gcaaagctctttaggttctaataatgtgcatatgaatgagaacctaaatgaagtgagacg
agcaccaccagaacaacctcaagaaccagatgaaccagaagaatcagaagaacaagaacc
tgttcgtcctgaacagcagaacattgagattccggaaggtggaggagttttaaccgagcc
acgatcttacacactatcgattcaactggccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGATTTCAACCACTTCACTGTG 20 133 2754 Antisense
TTGTCTTTTGGTTTTATTGCTCTTC 56 707 2803 Antisense
GACAATCCGTTTCATCGGAGGTGCA 45 363 2906 Antisense
GCACACCCATGAAGAACAACGGCCG 192 315 2948 Antisense
GGTGGGCAAAACTCTTTAGGCTTCA 485 395 2974 Antisense
GAAGAACAACTCTCCGGAACACAAA 574 319 3028 Antisense
TTACTACCACTGTAACAAGCCCCGA 176 681 3080 Antisense
GTGAGACGAGCACCACCAGAACAAC 456 483 3166 Antisense
GGAGGAGTTTTAACCGAGCCACGAT 588 513 3274 Antisense
CGAGCCACGATCTTACACACTATCG 341 251 3288 Antisense
ACACACTATCGATTCAACTGGCCAA 405 111 3302 Antisense
Sequence Source Affymetrix Proprietary Database