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[179007_at]

Description F14H8.5 /REP_DB=WormBase Gene ID /WP=CE09396 /TR=Q93483 /GB=CAB02932.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 16.1
(-2.1)
A 		10.4
(-2.5)
A 		3.8
(-3)
A 		82.9
(3)
A 		79
B 26.9
(3)
A 		8.6
(-2.1)
A 		9.1
(-2)
A 		5.4
(-3)
A 		22
C 36.6
(3)
A 		9.8
(-3)
A 		22.4
(-0.2)
A 		30.2
(1.6)
A 		27
avr 26.5
(0.4) 		9.6
(-3) 		11.8
(-2.6) 		39.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 13.3
(0)
A 		22.1
(3)
A 		11.7
(-0.5)
A 		6.5
(-2.3)
A 		7.1
(-2.1)
A 		4.3
(-3)
A 		18
B 38.8
(3)
A 		4.6
(-2.5)
A 		13
(-1.1)
A 		1.3
(-3)
A 		21
(0.2)
A 		19.7
(-0.1)
A 		38
C 21.5
(-0.5)
A 		48.4
(3)
A 		19.8
(-0.7)
A 		5.1
(-2.6)
A 		3.5
(-2.8)
A 		1.8
(-3)
A 		47
avr 24.5
(2.9) 		25
(3) 		14.8
(0) 		4.3
(-3) 		10.5
(-1.2) 		8.6
(-1.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.9
(-0.4)
A 		2.3
(-2.3)
A 		1
(-3)
A 		12.1
(3)
A 		11
B 8.6
(3)
A 		2.1
(-2.3)
A 		2.1
(-2.3)
A 		1.2
(-3)
A 		7
C 12.1
(3)
A 		2.8
(-3)
A 		7.8
(0.2)
A 		5.1
(-1.5)
A 		9
avr 8.9
(3) 		2.4
(-3) 		3.6
(-1.9) 		6.1
(0.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.5
(-1.7)
A 		7.9
(3)
A 		2.5
(-1.7)
A 		1.7
(-2.4)
A 		2.1
(-2)
A 		1
(-3)
A 		7
B 13.5
(3)
A 		1.5
(-2.5)
A 		3.2
(-1.7)
A 		0.3
(-3)
A 		8.5
(0.7)
A 		7.3
(0.2)
A 		13
C 8
(0.1)
A 		14.8
(3)
A 		5
(-1.1)
A 		1
(-2.8)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		14
avr 8
(2.9) 		8.1
(3) 		3.6
(-0.8) 		1
(-3) 		3.9
(-0.5) 		3
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12883
Sequence Type Exemplar sequence
Representative Public ID F14H8.5 NCBI
Target Description F14H8.5 /REP_DB=WormBase Gene ID /WP=CE09396 /TR=Q93483 /GB=CAB02932.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074296 NCBI Caenorhabditis elegans F14H8.5 (F14H8.5) mRNA, complete cds. 11/11 None
SNAP00000006131 ENSEMBL cdna:SNAP chromosome:CEL140:V:15023618:15024635:1 11/11 None
GENEFINDER00000006138 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15023618:15024635:1 11/11 None
F14H8.5 ENSEMBL cdna:known chromosome:CEL140:V:15023618:15024635:1 gene:F14H8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15023617-15024635(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H8.5
Entrez Gene 184500 Entrez gene
SwissProt Q93483 EMBL-EBI
WormBase CE09396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02932 Hypothetical protein F14H8.5 [Caenorhabditis elegans] ref|NP_506697.1| F14H8.5 [Caenorhabditis elegans] 1.0E-126
blast CAB02933 Hypothetical protein F14H8.4 [Caenorhabditis elegans] ref|NP_506698.1| F14H8.4 [Caenorhabditis elegans] 7.0E-49
Sequence
Target Sequence 
>C. ELEGANS:179007_AT
gtatcctactcgtcgtcgtatgagagcttctgaaagaagaacttacaaaagagattgcaa
gaatttgttagagagcgttgctggagaaaatccatttgaaggagatgaagagactgctaa
taattacacagaagcaattttcagcatttctatcaaagcaaaagttcttaaaacgtacat
ggatcttattgaatcgagcatcaatgaagagtgcccggttaatggacacattcagctctt
ctgcaatgagatcaacaatctcagtcatctttacgaagtcttcttccgtaaatcaattgt
cagcgtagacactcgtgttgaggaaaggaaagaaattgcacgagctgcttatagagatat
caagaatctcactatcatcatttacctgaacaaagaaagatcaaagacacttctccaaag
tgtcatgatgcacactgaatttcaaactcaccaggccgagaagctcgttgagcactacga
agcaactttcagtccaattcttaaggaagttcttccggatccaaatgctccacggattca
tagaactccaactcgtgcacagataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCCTACTCGTCGTCGTATGAGA 293 455 90 Antisense
GTTAATGGACACATTCAGCTCTTCT 660 445 307 Antisense
TCAACAATCTCAGTCATCTTTACGA 661 629 341 Antisense
GAAGTCTTCTTCCGTAAATCAATTG 397 335 364 Antisense
GTCAGCGTAGACACTCGTGTTGAGG 649 465 388 Antisense
GAATCTCACTATCATCATTTACCTG 306 329 453 Antisense
AAACTCACCAGGCCGAGAAGCTCGT 577 127 533 Antisense
GAAGCAACTTTCAGTCCAATTCTTA 110 341 568 Antisense
GAAGTTCTTCCGGATCCAAATGCTC 493 337 595 Antisense
TGCTCCACGGATTCATAGAACTCCA 135 583 615 Antisense
GAACTCCAACTCGTGCACAGATAAT 418 349 632 Antisense
Sequence Source Affymetrix Proprietary Database