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[179006_at]

Description R01E6.5 /REP_DB=WormBase Gene ID /WP=CE03522 /TR=Q21616 /GB=CAA92185.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 51      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 66.3
(0.8)
A 		90.1
(3)
A 		85
(2.5)
A 		24.1
(-3)
A 		66
B 34.5
(-3)
A 		150.5
(3)
A 		75.9
(-0.9)
A 		61.3
(-1.6)
A 		116
C 88.8
(1)
A 		127.9
(3)
A 		94.1
(1.3)
A 		10.3
(-3)
A 		118
avr 63.2
(-0.9) 		122.8
(3) 		85
(0.5) 		31.9
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 87.5
(0.1)
A 		67.8
(-1.2)
A 		38.9
(-3)
A 		38.3
(-3)
A 		135
(3)
A 		89.1
(0.2)
A 		97
B 54.7
(-3)
A 		83.8
(0.6)
A 		79.9
(0.1)
A 		82.7
(0.5)
A 		103.1
(3)
P 		74.1
(-0.6)
A 		48
C 107.8
(3)
A 		90.5
(1.9)
A 		14.3
(-3)
A 		65.9
(0.3)
A 		90.5
(1.9)
P 		55.9
(-0.3)
A 		94
avr 83.3
(0.6) 		80.7
(0.3) 		44.4
(-3) 		62.3
(-1.4) 		109.5
(3) 		73
(-0.4) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 24.1
(3)
A 		19.6
(1.7)
A 		22.2
(2.4)
A 		3.5
(-3)
A 		21
B 11
(-3)
A 		37.2
(3)
A 		17.6
(-1.5)
A 		13.1
(-2.5)
A 		26
C 29.4
(1.7)
A 		36.8
(3)
A 		32.8
(2.3)
A 		1.7
(-3)
A 		35
avr 21.5
(0.7) 		31.2
(3) 		24.2
(1.3) 		6.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16.1
(-1.6)
A 		24.1
(-0.1)
A 		8.5
(-3)
A 		9.7
(-2.8)
A 		40.7
(3)
A 		21.7
(-0.5)
A 		32
B 19
(-3)
A 		27.9
(-0.7)
A 		19.4
(-2.9)
A 		21.9
(-2.2)
A 		41.9
(3)
P 		27.6
(-0.7)
A 		23
C 39.9
(3)
A 		27.6
(1)
A 		3.6
(-3)
A 		13.3
(-1.4)
A 		29.3
(1.2)
P 		18.7
(-0.5)
A 		36
avr 25
(0.2) 		26.5
(0.6) 		10.5
(-3) 		15
(-2) 		37.3
(3) 		22.7
(-0.3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17723
Sequence Type Exemplar sequence
Representative Public ID R01E6.5 NCBI
Target Description R01E6.5 /REP_DB=WormBase Gene ID /WP=CE03522 /TR=Q21616 /GB=CAA92185.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077862 NCBI Caenorhabditis elegans R01E6.5 (R01E6.5) mRNA, complete cds. 11/11 None
SNAP00000031387 ENSEMBL cdna:SNAP chromosome:CEL140:X:13536965:13537876:1 11/11 None
GENEFINDER00000031397 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13536965:13537876:1 11/11 None
R01E6.5 ENSEMBL cdna:known chromosome:CEL140:X:13536970:13537961:1 gene:R01E6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13537015-13537876(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01E6.5
Entrez Gene 181476 Entrez gene
SwissProt Q21616 EMBL-EBI
WormBase CE03522 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE63129 Hypothetical protein CBG07427 [Caenorhabditis briggsae] 1.0E-123
blast CAA92185 Hypothetical protein R01E6.5 [Caenorhabditis elegans] ref|NP_510263.1| R01E6.5 [Caenorhabditis elegans] 1.0E-119
blast CAE63129 Hypothetical protein CBG07427 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:179006_AT
cacgacgcgcttcacaaggacgctgccgagcacaagcaaaacaaagaggctcaccaatct
ggatccggtaacaagtacgtcgatgatgcctcgaactacaacaaggatgtgaagaccaag
actttcggattcttcgactaccgttacgttcaaccacaataccacatggagcagtaccat
accgatgagaagcacgccaacaagtatgccggagatgagcacaacgccgggcaacagcac
aaggacaacggaggataccacgccgacggacaccaaggatacgacaaggcacaagaaaag
cacggagcttcccacaccaactacggaaacgaggacgccggacacaaatccaagtacgac
gacaacgagggcaaatacggagaccacaccgatggatactacaacaagggatacgacaac
tacggacaaggacacgactccgaaagctaccagccatcttactaccaaccgaagccaaag
tactacggaggacaccaatcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGACGCGCTTCACAAGGACGCTG 544 199 172 Antisense
AAAGAGGCTCACCAATCTGGATCCG 359 123 214 Antisense
GTACGTCGATGATGCCTCGAACTAC 399 457 246 Antisense
GACTTTCGGATTCTTCGACTACCGT 626 369 291 Antisense
GACTACCGTTACGTTCAACCACAAT 561 373 307 Antisense
GAAGCACGCCAACAAGTATGCCGGA 539 339 360 Antisense
GGACAACGGAGGATACCACGCCGAC 538 525 414 Antisense
ACGCCGACGGACACCAAGGATACGA 248 89 431 Antisense
GAAACGAGGACGCCGGACACAAATC 423 357 497 Antisense
CGAAAGCTACCAGCCATCTTACTAC 140 251 612 Antisense
GTACTACGGAGGACACCAATCCCAC 426 293 651 Antisense
Sequence Source Affymetrix Proprietary Database