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[179005_at]

Description C04B4.6 /REP_DB=WormBase Gene ID /WP=CE05208 /TR=Q17618 /GB=CAA93525.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 22.1
(-3)
A 		27.3
(-2.4)
A 		27.4
(-2.4)
A 		75.2
(3)
A 		53
B 13.6
(-3)
A 		87.1
(3)
A 		38.5
(-1)
A 		45.8
(-0.4)
A 		74
C 55
(-1.6)
A 		44.1
(-2.1)
A 		24.4
(-3)
A 		151.1
(3)
A 		127
avr 30.2
(-3) 		52.8
(-0.8) 		30.1
(-3) 		90.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 35.2
(1.8)
A 		34.6
(1.7)
A 		42.4
(3)
P 		5.1
(-3)
A 		31.3
(1.2)
A 		14.1
(-1.6)
A 		37
B 18
(-2.7)
A 		26.9
(1.3)
A 		26.1
(0.9)
A 		24.3
(0.1)
A 		17.3
(-3)
A 		30.7
(3)
A 		13
C 5.8
(-2.4)
A 		20.6
(0.9)
A 		3
(-3)
A 		10.8
(-1.3)
A 		19.3
(0.6)
A 		30.3
(3)
A 		27
avr 19.7
(-0.3) 		27.4
(3) 		23.8
(1.5) 		13.4
(-3) 		22.6
(0.9) 		25
(2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 8.1
(-0.4)
A 		5.9
(-3)
A 		7.2
(-1.5)
A 		11
(3)
A 		5
B 4.3
(-3)
A 		21.5
(3)
A 		8.9
(-1.4)
A 		9.8
(-1.1)
A 		17
C 18.2
(0.4)
A 		12.7
(-1.5)
A 		8.5
(-3)
A 		25.5
(3)
A 		17
avr 10.2
(-1.3) 		13.4
(1.3) 		8.2
(-3) 		15.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.5
(-0.2)
A 		12.3
(3)
A 		9.2
(1.3)
P 		1.3
(-3)
A 		9.4
(1.4)
A 		3.4
(-1.9)
A 		11
B 6.2
(-3)
A 		9
(0.2)
A 		6.3
(-2.9)
A 		6.4
(-2.8)
A 		7
(-2.1)
A 		11.5
(3)
A 		5
C 2.1
(-2.2)
A 		6.3
(0.5)
A 		0.8
(-3)
A 		2.2
(-2.1)
A 		6.2
(0.4)
A 		10.2
(3)
A 		9
avr 4.9
(-1.4) 		9.2
(3) 		5.4
(-0.9) 		3.3
(-3) 		7.5
(1.3) 		8.4
(2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16732
Sequence Type Exemplar sequence
Representative Public ID C04B4.6 NCBI
Target Description C04B4.6 /REP_DB=WormBase Gene ID /WP=CE05208 /TR=Q17618 /GB=CAA93525.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077645 NCBI Caenorhabditis elegans C04B4.6 (C04B4.6) mRNA, complete cds. 11/11 None
C04B4.6 ENSEMBL cdna:known chromosome:CEL140:X:12275095:12275598:-1 gene:C04B4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029830 5/11 Cross Hyb Matching Probes None
GENEFINDER00000029841 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12275094-12275598(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04B4.6
Entrez Gene 182193 Entrez gene
SwissProt Q17618 EMBL-EBI
WormBase CE05208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93525 Hypothetical protein C04B4.6 [Caenorhabditis elegans] ref|NP_510046.1| C04B4.6 [Caenorhabditis elegans] 4.0E-58
Sequence
Target Sequence 
>C. ELEGANS:179005_AT
tcgccgaaaaatccgggtgccgcaaagccctgtacagtatgcctcttgctttttgctgca
taaacacaatcaacataaaacgtgggaaactaaattttcggtcgtccttttttgctttca
ctcccaacaaagtgttaaaaccgtcgaatatttttacttcatttgttataatggcaaatt
ttattgaggatccatcatactttgctgatccagaaaaggttttcttgaaagtgtatttgt
acgacaaggaagtcatatttcttcgcatgaccagaacgatcaccatggcacgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCGAAAAATCCGGGTGCCGCAA 580 595 41 Antisense
GCCGCAAAGCCCTGTACAGTATGCC 566 285 59 Antisense
GTACAGTATGCCTCTTGCTTTTTGC 279 461 72 Antisense
GCCTCTTGCTTTTTGCTGCATAAAC 89 283 81 Antisense
TGCTGCATAAACACAATCAACATAA 112 581 94 Antisense
TTTTTTGCTTTCACTCCCAACAAAG 217 675 148 Antisense
GGCAAATTTTATTGAGGATCCATCA 644 533 213 Antisense
GATCCATCATACTTTGCTGATCCAG 615 415 229 Antisense
GACAAGGAAGTCATATTTCTTCGCA 405 365 283 Antisense
ATTTCTTCGCATGACCAGAACGATC 649 15 297 Antisense
CAGAACGATCACCATGGCACGAATG 6 205 312 Antisense
Sequence Source Affymetrix Proprietary Database