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[179003_at]

Description F46A8.8 /REP_DB=WormBase Gene ID /WP=CE24985 /TR=Q9TVP8 /GB=CAB63394.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 4.5
(-3)
A 		8.3
(-2.5)
A 		10.3
(-2.2)
A 		49.6
(3)
A 		45
B 10.2
(3)
A 		6.3
(-3)
A 		7.5
(-1.2)
A 		8.2
(-0.1)
A 		4
C 7.5
(-2.3)
A 		4.2
(-3)
A 		9.8
(-1.9)
A 		33.9
(3)
A 		30
avr 7.4
(-2.7) 		6.3
(-3) 		9.2
(-2.3) 		30.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.2
(-1.7)
A 		7.9
(-1.8)
A 		5.5
(-3)
A 		7
(-2.3)
A 		12.8
(0.6)
A 		17.7
(3)
A 		12
B 9.7
(3)
A 		4.9
(-2.9)
A 		6.9
(-0.4)
A 		9
(2.1)
A 		5.1
(-2.6)
A 		4.8
(-3)
A 		5
C 3.3
(-3)
A 		12.8
(-0.9)
A 		30.4
(3)
A 		10.9
(-1.3)
A 		15.5
(-0.3)
A 		6
(-2.4)
A 		27
avr 7.1
(-3) 		8.5
(-1.8) 		14.3
(3) 		9
(-1.4) 		11.1
(0.3) 		9.5
(-1) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.6
(-3)
A 		1.8
(-2.8)
A 		2.7
(-1.8)
A 		7.3
(3)
A 		6
B 3.2
(3)
A 		1.6
(-3)
A 		1.7
(-2.6)
A 		1.8
(-2.3)
A 		2
C 2.5
(-1.3)
A 		1.2
(-3)
A 		3.4
(-0.1)
A 		5.7
(3)
A 		5
avr 2.4
(-1.4) 		1.5
(-3) 		2.6
(-1.1) 		4.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		2.8
(0.1)
A 		1.2
(-3)
A 		1.8
(-1.8)
A 		3.9
(2.2)
A 		4.3
(3)
A 		3
B 3.4
(3)
A 		1.6
(-3)
A 		1.7
(-2.7)
A 		2.4
(-0.3)
A 		2.1
(-1.3)
A 		1.8
(-2.3)
A 		2
C 1.2
(-3)
A 		3.9
(-0.5)
A 		7.7
(3)
A 		2.2
(-2.1)
A 		5
(0.5)
A 		2
(-2.3)
A 		7
avr 2
(-3) 		2.8
(-0.2) 		3.5
(2.3) 		2.1
(-2.6) 		3.7
(3) 		2.7
(-0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179003_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2259
Sequence Type Exemplar sequence
Representative Public ID F46A8.8 NCBI
Target Description F46A8.8 /REP_DB=WormBase Gene ID /WP=CE24985 /TR=Q9TVP8 /GB=CAB63394.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060480 NCBI Caenorhabditis elegans F46A8.8 (F46A8.8) mRNA, complete cds. 11/11 None
F46A8.8 ENSEMBL cdna:known chromosome:CEL140:I:11243509:11244831:-1 gene:F46A8.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030283 6/11 Cross Hyb Matching Probes None
SNAP00000031217 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11243439-11244762(-) 99.11 100.0
Public Domain and Genome References
Gene Title
Ensembl F46A8.8
Entrez Gene 185824 Entrez gene
SwissProt Q9TVP8 EMBL-EBI
WormBase CE24985 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63394 Hypothetical protein F46A8.8 [Caenorhabditis elegans] emb|CAB63201.1| Hypothetical protein F46A8.8 [Caenorhabditis elegans] ref|NP_492881.1| F46A8.8 [Caenorhabditis elegans] 1.0E-139
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 1.0E-80
blast AAF99965 Hypothetical protein F49F1.9 [Caenorhabditis elegans] ref|NP_500490.1| F49F1.9 [Caenorhabditis elegans] 3.0E-64
Sequence
Target Sequence 
>C. ELEGANS:179003_AT
atgggccgtttgggcccgatgtacgttatccgattcctggaggatattgggatacaggca
aggtcctccgattttatggtgttcctggacaaggtagatggtccattaacttggatcaag
caaagacgtggctgtttcatttcgcgtcacagcctgatctgggccatgttgtccgaaccc
gtgagcaaaatgggcaatttcaaacccctgacacatatggtggaaacccatttcctgctg
gtgccaatttcaatgttactatggtcaatcagccaacgcatattgagattcatgtcaatc
aggttttcttcacaaactataatcatcgaactggcaatccatcgagagactatcaacacg
tcgttttctccggaaatgctgggtggcagaccggtgaaacatggggcggcaatccgtata
ctgtcggtgccaatttcaatgtcactttgatcaatcagccgtcacatatcgagattcatg
tcaatcaggcattcttcgtgaactttaaccatcgagttgccaatccgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCCGTTTGGGCCCGATGTACG 96 3 314 Antisense
AAGCAAAGACGTGGCTGTTTCATTT 29 151 431 Antisense
GTTGTCCGAACCCGTGAGCAAAATG 592 437 481 Antisense
GGGCAATTTCAAACCCCTGACACAT 191 493 505 Antisense
TTTTCTCCGGAAATGCTGGGTGGCA 586 675 677 Antisense
GTGGCAGACCGGTGAAACATGGGGC 586 491 696 Antisense
ATGGGGCGGCAATCCGTATACTGTC 483 49 714 Antisense
GTATACTGTCGGTGCCAATTTCAAT 354 451 729 Antisense
GATCAATCAGCCGTCACATATCGAG 550 421 762 Antisense
GGCATTCTTCGTGAACTTTAACCAT 461 537 801 Antisense
TAACCATCGAGTTGCCAATCCGTCG 316 635 819 Antisense
Sequence Source Affymetrix Proprietary Database