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[179002_at]

Description W03H9.3 /REP_DB=WormBase Gene ID /WP=CE20136 /TR=Q9U352 /GB=CAB63318.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 27.4
(-2.2)
A 		18.8
(-3)
A 		27.3
(-2.2)
A 		82.1
(3)
A 		63
B 14.8
(3)
A 		13.6
(1.3)
A 		11.9
(-1.1)
A 		10.6
(-3)
A 		4
C 30.6
(-1.6)
A 		9.9
(-3)
A 		37.1
(-1.1)
A 		96
(3)
M 		86
avr 24.3
(-1.7) 		14.1
(-3) 		25.4
(-1.6) 		62.9
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 2.3
(-3)
A 		8.5
(-1.6)
A 		14.2
(-0.3)
A 		29
(3)
A 		4.7
(-2.5)
A 		28
(2.8)
A 		27
B 20.2
(3)
A 		5.4
(-3)
A 		13.5
(0.3)
A 		13.1
(0.1)
A 		8.5
(-1.7)
A 		8.9
(-1.6)
A 		15
C 5.7
(-2.7)
A 		15.1
(-1.8)
A 		2.7
(-3)
A 		67
(3)
A 		13.1
(-2)
A 		4.6
(-2.8)
A 		64
avr 9.4
(-2.9) 		9.7
(-2.8) 		10.1
(-2.7) 		36.4
(3) 		8.8
(-3) 		13.8
(-1.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10
(1.5)
A 		4.1
(-3)
A 		7.1
(-0.7)
A 		12
(3)
A 		8
B 4.7
(3)
A 		3.4
(-0.3)
A 		2.8
(-1.8)
A 		2.3
(-3)
A 		2
C 10.1
(0.3)
A 		2.8
(-3)
A 		12.9
(1.5)
A 		16.2
(3)
M 		13
avr 8.3
(1.3) 		3.4
(-3) 		7.6
(0.7) 		10.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.4
(-3)
A 		3
(-0.8)
A 		3.1
(-0.7)
A 		7.4
(3)
A 		1.4
(-2.1)
A 		6.8
(2.5)
A 		7
B 7
(3)
A 		1.8
(-3)
A 		3.3
(-1.3)
A 		3.5
(-1)
A 		3.5
(-1)
A 		3.3
(-1.3)
A 		5
C 2.1
(-2.3)
A 		4.6
(-1.2)
A 		0.7
(-3)
A 		13.5
(3)
A 		4.2
(-1.4)
A 		1.5
(-2.6)
A 		13
avr 3.2
(-2.2) 		3.1
(-2.3) 		2.4
(-3) 		8.1
(3) 		3
(-2.4) 		3.9
(-1.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3428
Sequence Type Exemplar sequence
Representative Public ID W03H9.3 NCBI
Target Description W03H9.3 /REP_DB=WormBase Gene ID /WP=CE20136 /TR=Q9U352 /GB=CAB63318.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064552 NCBI Caenorhabditis elegans W03H9.3 (W03H9.3) mRNA, complete cds. 11/11 None
SNAP00000006318 ENSEMBL cdna:SNAP chromosome:CEL140:II:14142910:14143531:-1 9/11 None
GENEFINDER00000006322 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14141579:14145478:-1 11/11 None
W03H9.3 ENSEMBL cdna:known chromosome:CEL140:II:14142947:14143291:-1 gene:W03H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14142943-14143288(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03H9.3
Entrez Gene 3565086 Entrez gene
SwissProt Q9U352 EMBL-EBI
WormBase CE20136 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63318 Hypothetical protein W03H9.3 [Caenorhabditis elegans] ref|NP_496953.1| W03H9.3 [Caenorhabditis elegans] 1.0E-39
blast CAB63318 Hypothetical protein W03H9.3 [Caenorhabditis elegans] ref|NP_496953.1| W03H9.3 [Caenorhabditis elegans] 2.0E-37
blast CAB04507 Hypothetical protein F57G4.2 [Caenorhabditis elegans] ref|NP_507459.1| F57G4.2 [Caenorhabditis elegans] 9.0E-37
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 3.0E-36
blast AAA21165 Hypothetical protein C26E6.11 [Caenorhabditis elegans] ref|NP_498038.1| C26E6.11 [Caenorhabditis elegans] 1.0E-35
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.79999995231628
Sequence
Target Sequence 
>C. ELEGANS:179002_AT
gattgggtacggattttttgagacagttgacgatttcgatgatgtcgagtacagaataat
gccgcttcagaactccttctccgcgaaaatcgttaacttttcagttaagagtgcggaatc
ggccggaaaaatcgccacccacatcaaattggatgattggaagaacattttcgcgcctgc
cacaatgatcagtggtttttttgagcctgtcgtcaagagctatctcgagcaagctctcaa
gctcgaaatggtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGGGTACGGATTTTTTGAGACA 626 433 15 Antisense
TTTGAGACAGTTGACGATTTCGATG 588 667 31 Antisense
AGAATAATGCCGCTTCAGAACTCCT 459 75 67 Antisense
GCGGAATCGGCCGGAAAAATCGCCA 161 293 127 Antisense
AAATCGCCACCCACATCAAATTGGA 682 117 143 Antisense
ATTGGAAGAACATTTTCGCGCCTGC 172 3 170 Antisense
TCGCGCCTGCCACAATGATCAGTGG 626 599 185 Antisense
GATCAGTGGTTTTTTTGAGCCTGTC 492 419 201 Antisense
GAGCCTGTCGTCAAGAGCTATCTCG 488 385 217 Antisense
GCTATCTCGAGCAAGCTCTCAAGCT 492 303 233 Antisense
AAGCTCTCAAGCTCGAAATGGTGAA 687 149 245 Antisense
Sequence Source Affymetrix Proprietary Database