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[179001_at]

Description T27E9.8 /REP_DB=WormBase Gene ID /WP=CE14277 /TR=O18145 /GB=CAB04877.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 19.5
(-3)
A 		38.3
(-1.2)
M 		26.2
(-2.3)
A 		81.1
(3)
P 		62
B 21.1
(-1)
A 		24.5
(3)
A 		20.9
(-1.2)
A 		19.4
(-3)
A 		5
C 19.9
(-2)
A 		29.1
(1.6)
A 		17.5
(-3)
A 		32.5
(3)
A 		15
avr 20.2
(-3) 		30.6
(-0.4) 		21.5
(-2.7) 		44.3
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.1
(-2.8)
A 		4.6
(-2.4)
A 		36.7
(3)
A 		31.4
(2.1)
A 		31.1
(2.1)
A 		1.2
(-3)
A 		36
B 25.2
(-0.2)
A 		17.4
(-2.3)
A 		27.3
(0.4)
A 		37.2
(3)
A 		29.5
(1)
A 		14.6
(-3)
A 		23
C 5.7
(-2)
A 		29
(3)
A 		7.7
(-1.6)
A 		4.3
(-2.3)
A 		8.7
(-1.4)
A 		1
(-3)
A 		28
avr 11
(-1.3) 		17
(0.7) 		23.9
(2.9) 		24.3
(3) 		23.1
(2.6) 		5.6
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.1
(-2.8)
A 		8.3
(-1.3)
M 		6.9
(-3)
A 		11.9
(3)
P 		5
B 6.7
(3)
A 		6.1
(1.6)
A 		4.8
(-1.4)
A 		4.1
(-3)
A 		3
C 6.6
(-0.7)
A 		8.4
(3)
A 		6.1
(-1.8)
A 		5.5
(-3)
A 		3
avr 6.8
(0.2) 		7.6
(3) 		5.9
(-3) 		7.2
(1.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		1.6
(-2.1)
A 		8
(2.1)
A 		8
(2.1)
A 		9.4
(3)
A 		0.3
(-3)
A 		9
B 8.8
(0.1)
A 		5.8
(-2.6)
A 		6.6
(-1.9)
A 		9.8
(1)
A 		12
(3)
A 		5.4
(-3)
A 		7
C 2.1
(-1.7)
A 		8.8
(3)
A 		2
(-1.8)
A 		0.9
(-2.6)
A 		2.8
(-1.2)
A 		0.3
(-3)
A 		9
avr 3.8
(-1.2) 		5.4
(0.3) 		5.5
(0.4) 		6.2
(1.1) 		8.1
(3) 		2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7266
Sequence Type Exemplar sequence
Representative Public ID T27E9.8 NCBI
Target Description T27E9.8 /REP_DB=WormBase Gene ID /WP=CE14277 /TR=O18145 /GB=CAB04877.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067387 NCBI Caenorhabditis elegans T27E9.8 (T27E9.8) mRNA, complete cds. 11/11 None
SNAP00000014271 ENSEMBL cdna:SNAP chromosome:CEL140:III:13478519:13479145:1 11/11 None
T27E9.8 ENSEMBL cdna:known chromosome:CEL140:III:13478077:13479145:1 gene:T27E9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13478072-13479141(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E9.8
Entrez Gene 189002 Entrez gene
SwissProt O18145 EMBL-EBI
WormBase CE14277 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04877 Hypothetical protein T27E9.8 [Caenorhabditis elegans] ref|NP_499788.1| T27E9.8 [Caenorhabditis elegans] 1.0E-180
blast CAB04877 Hypothetical protein T27E9.8 [Caenorhabditis elegans] ref|NP_499788.1| T27E9.8 [Caenorhabditis elegans] 1.0E-119
blast CAI06058 Hypothetical protein C44B9.6 [Caenorhabditis elegans] ref|NP_001021216.1| C44B9.6 [Caenorhabditis elegans] 1.0E-53
blast CAB07270 Hypothetical protein R17.1 [Caenorhabditis elegans] ref|NP_499389.1| R17.1 [Caenorhabditis elegans] 1.0E-48
blast CAB03232 Hypothetical protein R07H5.7 [Caenorhabditis elegans] ref|NP_502100.1| R07H5.7 [Caenorhabditis elegans] 2.0E-35
blast CAI06058 Hypothetical protein C44B9.6 [Caenorhabditis elegans] ref|NP_001021216.1| C44B9.6 [Caenorhabditis elegans] 6.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.3E-8
Sequence
Target Sequence 
>C. ELEGANS:179001_AT
tagaatctcgcaaatttcaaaccgcgatcagttccaacttcaaggctatccaattgtggg
atagatttactgtaaaactagaagacgtgatagtttcaaatagctatcaaatatctgtta
gtaagccattacccccaacagatatatgtttatttctgaaacattggattaacggatcga
atcaacaactggagtttttcttcacccgactttctgccggtgttgatagaaacaaattca
tttcaactgctctgaatggtattggtcatcaaattgcacctatcaatagaaagcgtgttt
ttgtgccatgtgtctatagatggtacgacaaaaatatcgaagtcaaaggcggatttgata
ttcaacggaatgatggaacacaagcaactgttaccttggctatcgaggctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAATCTCGCAAATTTCAAACCGC 217 653 509 Antisense
TTCAAACCGCGATCAGTTCCAACTT 72 687 524 Antisense
GTTCCAACTTCAAGGCTATCCAATT 49 441 539 Antisense
TGTTAGTAAGCCATTACCCCCAACA 139 549 624 Antisense
CCCGACTTTCTGCCGGTGTTGATAG 655 257 713 Antisense
AACAAATTCATTTCAACTGCTCTGA 548 133 739 Antisense
ACTGCTCTGAATGGTATTGGTCATC 533 97 754 Antisense
TTGGTCATCAAATTGCACCTATCAA 293 709 770 Antisense
AAGCGTGTTTTTGTGCCATGTGTCT 19 149 799 Antisense
GAACACAAGCAACTGTTACCTTGGC 196 353 884 Antisense
GTTACCTTGGCTATCGAGGCTGGAA 620 445 898 Antisense
Sequence Source Affymetrix Proprietary Database