[Home] | [Total List]

[179000_at]

Description C49G9.1 /REP_DB=WormBase Gene ID /WP=CE18555 /TR=Q9XXK9 /GB=CAA18634.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 13      6grp_total > 93      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 85.9
(-3)
A 		149.4
(2)
P 		162
(3)
P 		127.7
(0.3)
A 		76
B 142
(3)
P 		118.4
(-3)
P 		136.5
(1.6)
P 		121
(-2.3)
P 		24
C 138.6
(-1.5)
P 		147.8
(-1.1)
P 		110.2
(-3)
P 		226.4
(3)
P 		116
avr 122.2
(-3) 		138.5
(-0.3) 		136.2
(-0.7) 		158.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 98.9
(-3)
A 		141.2
(0.5)
P 		113.6
(-1.8)
P 		109.8
(-2.1)
A 		172.4
(3)
P 		137
(0.1)
P 		74
B 136.1
(0.4)
P 		114.4
(-0.7)
P 		110.1
(-0.9)
P 		114.9
(-0.7)
P 		185.3
(3)
P 		70.6
(-3)
P 		115
C 150.3
(0.2)
P 		123.3
(-3)
P 		147.7
(-0.1)
A 		168.1
(2.3)
A 		173.7
(3)
P 		129.5
(-2.3)
P 		50
avr 128.4
(-1.5) 		126.3
(-1.7) 		123.8
(-1.9) 		130.9
(-1.3) 		177.1
(3) 		112.4
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 31.3
(0.2)
A 		32.4
(0.5)
P 		42.3
(3)
P 		18.7
(-3)
A 		24
B 45.3
(3)
P 		29.2
(-2)
P 		31.6
(-1.2)
P 		25.8
(-3)
P 		20
C 45.9
(3)
P 		42.5
(0.4)
P 		38.4
(-2.8)
P 		38.2
(-3)
P 		8
avr 40.8
(3) 		34.7
(0.2) 		37.4
(1.5) 		27.6
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 18.2
(-3)
A 		50.2
(2.7)
P 		24.7
(-1.8)
P 		27.8
(-1.3)
A 		52
(3)
P 		33.4
(-0.3)
P 		34
B 47.4
(-0.4)
P 		38.1
(-1.6)
P 		26.7
(-3)
P 		30.4
(-2.5)
P 		75.3
(3)
P 		26.3
(-3)
P 		49
C 55.7
(2.9)
P 		37.6
(-2)
P 		37.6
(-2)
A 		33.8
(-3)
A 		56.2
(3)
P 		43.4
(-0.4)
P 		22
avr 40.4
(-1) 		42
(-0.7) 		29.7
(-3) 		30.7
(-2.8) 		61.2
(3) 		34.4
(-2.1) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1589
Sequence Type Exemplar sequence
Representative Public ID C49G9.1 NCBI
Target Description C49G9.1 /REP_DB=WormBase Gene ID /WP=CE18555 /TR=Q9XXK9 /GB=CAA18634.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060785 NCBI Caenorhabditis elegans C49G9.1 (C49G9.1) mRNA, complete cds. 11/11 None
SNAP00000043252 ENSEMBL cdna:SNAP chromosome:CEL140:I:12571090:12573812:1 9/11 None
GENEFINDER00000043255 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12571090:12573816:1 10/11 None
C49G9.1 ENSEMBL cdna:known chromosome:CEL140:I:12572643:12573926:1 gene:C49G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12572573-12573857(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49G9.1
Entrez Gene 183626 Entrez gene
SwissProt Q9XXK9 EMBL-EBI
WormBase CE18555 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18634 Hypothetical protein C49G9.1 [Caenorhabditis elegans] ref|NP_493186.1| C49G9.1 [Caenorhabditis elegans] 7.0E-61
blast CAA18634 Hypothetical protein C49G9.1 [Caenorhabditis elegans] ref|NP_493186.1| C49G9.1 [Caenorhabditis elegans] 8.0E-55
blast CAA18634 Hypothetical protein C49G9.1 [Caenorhabditis elegans] ref|NP_493186.1| C49G9.1 [Caenorhabditis elegans] 2.0E-51
blast CAE64100 Hypothetical protein CBG08708 [Caenorhabditis briggsae] 2.0E-23
blast CAE64100 Hypothetical protein CBG08708 [Caenorhabditis briggsae] 8.0E-23
blast CAE64100 Hypothetical protein CBG08708 [Caenorhabditis briggsae] 5.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493186.1 1 33-55
C49G9.1 1 33-55
SNAP00000043252 2 13-35,101-123
GENEFINDER00000043255 2 13-35,145-167
Sequence
Target Sequence 
>C. ELEGANS:179000_AT
gcggtctgctgataaactccaatcggcgaaagggctcgagttccgggtttggatgtgagg
gatggttttgtgatttgatggacggtgcaatggttatgttagtggttatggttatcgcca
cagctctcataggctgcctaaaagcctgcttgtgtaaaaaacaaaaacaattgctccgtg
agcccaagccaacatcagaagcggcgcaagaggtgccgaatggtccagaactaccacaaa
tctcagaggctccgccgccaatgttacctgtagtgattgtgttggaaaatccaccagaat
acgcagaaaacgatcaatatatgcctcctgcttattgtaccttgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGTCTGCTGATAAACTCCAATCG 401 293 26 Antisense
AATCGGCGAAAGGGCTCGAGTTCCG 542 169 46 Antisense
TGGTTATGGTTATCGCCACAGCTCT 410 551 128 Antisense
CCACAGCTCTCATAGGCTGCCTAAA 98 275 143 Antisense
AAACAATTGCTCCGTGAGCCCAAGC 595 129 190 Antisense
GAGCCCAAGCCAACATCAGAAGCGG 13 387 205 Antisense
AGGTGCCGAATGGTCCAGAACTACC 224 57 236 Antisense
TACCACAAATCTCAGAGGCTCCGCC 117 651 257 Antisense
CGCCGCCAATGTTACCTGTAGTGAT 225 257 278 Antisense
AAACGATCAATATATGCCTCCTGCT 161 127 333 Antisense
GCCTCCTGCTTATTGTACCTTGAGA 125 283 348 Antisense
Sequence Source Affymetrix Proprietary Database