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[178999_at]

Description T03F7.4 /REP_DB=WormBase Gene ID /WP=CE06347 /TR=Q22115 /GB=CAA98518.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 03      6grp_total_sub > Hat      6grp_cgc > 65      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 45.5
(-2.2)
A 		33.3
(-3)
A 		50.8
(-1.9)
A 		124.9
(3)
P 		92
B 33.8
(-2.8)
P 		31.7
(-2.9)
A 		30
(-3)
A 		127
(3)
P 		97
C 51.2
(-1.4)
A 		64
(-0.6)
P 		22.8
(-3)
A 		127.8
(3)
P 		105
avr 43.5
(-2.4) 		43
(-2.4) 		34.5
(-3) 		126.6
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 19.2
(-3)
A 		38.9
(-1.3)
P 		71.3
(1.5)
P 		26.2
(-2.4)
A 		89
(3)
A 		55.6
(0.1)
A 		70
B 57.6
(3)
M 		50.3
(0.5)
P 		40.2
(-3)
P 		50.6
(0.6)
P 		47.8
(-0.4)
P 		41.3
(-2.6)
P 		17
C 28.4
(-1.9)
A 		81
(3)
P 		36.8
(-1.1)
A 		64.8
(1.5)
A 		16.5
(-3)
A 		50.5
(0.2)
P 		65
avr 35.1
(-3) 		56.7
(3) 		49.4
(1) 		47.2
(0.4) 		51.1
(1.4) 		49.1
(0.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.6
(2.1)
A 		7.2
(-3)
A 		13.3
(0.3)
A 		18.3
(3)
P 		11
B 10.8
(-1.8)
P 		7.8
(-2.7)
A 		6.9
(-3)
A 		27.1
(3)
P 		20
C 16.9
(0.9)
A 		18.4
(1.6)
P 		8
(-3)
A 		21.6
(3)
P 		14
avr 14.8
(-0.5) 		11.1
(-2.2) 		9.4
(-3) 		22.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.5
(-3)
A 		13.8
(-0.3)
P 		15.5
(0.1)
P 		6.7
(-2.2)
A 		26.8
(3)
A 		13.5
(-0.4)
A 		23
B 20
(3)
M 		16.8
(1.1)
P 		9.8
(-3)
P 		13.4
(-0.9)
P 		19.4
(2.6)
P 		15.4
(0.3)
P 		10
C 10.5
(-1.4)
A 		24.7
(3)
P 		9.4
(-1.7)
A 		13
(-0.6)
A 		5.3
(-3)
A 		16.9
(0.6)
P 		19
avr 11.3
(-2.8) 		18.4
(3) 		11.6
(-2.5) 		11
(-3) 		17.2
(2) 		15.3
(0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13177
Sequence Type Exemplar sequence
Representative Public ID T03F7.4 NCBI
Target Description T03F7.4 /REP_DB=WormBase Gene ID /WP=CE06347 /TR=Q22115 /GB=CAA98518.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073469(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073469 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-47) (srh-47) mRNA, complete cds. 11/11 None
T03F7.4 ENSEMBL cdna:known chromosome:CEL140:V:11301961:11303227:-1 gene:T03F7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11302129-11303227(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-47
Ensembl T03F7.4
Entrez Gene 188026 Entrez gene
SwissProt Q22115 EMBL-EBI
WormBase CE34496 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98518 Hypothetical protein T03F7.4 [Caenorhabditis elegans] ref|NP_505870.2| Serpentine Receptor, class H family member (srh-47) [Caenorhabditis elegans] 0.0
blast CAA98517 Hypothetical protein T03F7.3 [Caenorhabditis elegans] ref|NP_505871.2| Serpentine Receptor, class H family member (srh-46) [Caenorhabditis elegans] 1.0E-145
blast CAE75216 Hypothetical protein CBG23165 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505870.2 7 20-42,61-83,98-120,141-160,202-224,245-267,282-304
T03F7.4 7 20-42,61-83,98-120,141-160,202-224,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:178999_AT
atgtagcagttgcctgtcttggagaagtaggatcttccattgtttttatgtttgaaaacc
ggcaaaatcaaacaataacttcttcgttcaaaattacatctgaaaatggaagaaaagtgt
tcttgggacttaatgtgatatttccatgggtggcttcatcgatatctcttcttagaactc
ctaatcaagattcggctaaattggaaatgctaaaaataattccgtgtccaacattagagt
actttgaactgcctattattattgtaacaacggaagcaaaaaccattggagccgtacttt
ttgcactattaatttttattttttctcaaactatattttttattttacattcttcatttt
atttatgcaaatctacaacgtctctggctgtttccgaaagaaccaagaaactgaaaagaa
aatatttcttatcagtttgtattcaagtaataattccaattgttattatggcgtttccag
tcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTAGCAGTTGCCTGTCTTGGAGA 85 49 320 Antisense
GTAGGATCTTCCATTGTTTTTATGT 166 457 346 Antisense
GATATTTCCATGGGTGGCTTCATCG 8 427 456 Antisense
GCTTCATCGATATCTCTTCTTAGAA 299 305 472 Antisense
AGAACTCCTAATCAAGATTCGGCTA 153 73 493 Antisense
ATTCCGTGTCCAACATTAGAGTACT 376 5 538 Antisense
GAGTACTTTGAACTGCCTATTATTA 671 397 556 Antisense
ATTGGAGCCGTACTTTTTGCACTAT 612 3 604 Antisense
ATGCAAATCTACAACGTCTCTGGCT 683 43 684 Antisense
CGTCTCTGGCTGTTTCCGAAAGAAC 486 245 698 Antisense
GTTATTATGGCGTTTCCAGTCAGTT 687 447 781 Antisense
Sequence Source Affymetrix Proprietary Database