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[178998_at]

Description Y2H9A.4 /REP_DB=WormBase Gene ID /WP=CE21292 /TR=P91990 /GB=CAA16278.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 13.2
(0.1)
A 		3.3
(-3)
A 		4
(-2.8)
A 		22.2
(3)
A 		19
B 3.4
(-3)
A 		3.2
(-3)
A 		15.7
(-0.6)
A 		34.5
(3)
P 		31
C 16.4
(-3)
A 		22.3
(-2)
A 		33.3
(-0.2)
A 		52.3
(3)
A 		36
avr 11
(-2.7) 		9.6
(-3) 		17.7
(-1.2) 		36.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 3.9
(-3)
A 		7.2
(-2.6)
A 		61
(3)
P 		3.6
(-3)
A 		14
(-1.9)
A 		3.7
(-3)
A 		57
B 29.3
(3)
A 		24.2
(1.7)
A 		23
(1.5)
A 		4.9
(-3)
A 		15.1
(-0.5)
A 		22.5
(1.3)
P 		24
C 2.6
(-3)
A 		32.9
(2.1)
A 		23.2
(0.4)
A 		38.5
(3)
A 		19
(-0.3)
A 		16.9
(-0.6)
A 		36
avr 11.9
(-3) 		21.4
(-0.6) 		35.7
(3) 		15.7
(-2) 		16
(-2) 		14.4
(-2.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.8
(3)
A 		0.7
(-3)
A 		1
(-2.6)
A 		3.2
(0.7)
A 		4
B 1.1
(-2.7)
A 		0.8
(-3)
A 		3.6
(-0.5)
A 		7.4
(3)
P 		7
C 5.4
(-3)
A 		6.4
(-2)
A 		11.6
(3)
A 		8.8
(0.3)
A 		6
avr 3.8
(-1.2) 		2.6
(-3) 		5.4
(1.3) 		6.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.6
(-2.1)
A 		13.3
(3)
P 		0.9
(-2.9)
A 		4.2
(-1.3)
A 		0.9
(-2.9)
A 		13
B 10.2
(3)
A 		8.1
(1.6)
A 		5.6
(-0.1)
A 		1.3
(-3)
A 		6.1
(0.2)
A 		8.4
(1.8)
P 		9
C 1
(-3)
A 		10
(3)
A 		5.9
(0.3)
A 		7.7
(1.5)
A 		6.2
(0.5)
A 		5.7
(0.1)
A 		9
avr 4
(-2.2) 		6.9
(1.3) 		8.3
(3) 		3.3
(-3) 		5.5
(-0.4) 		5
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14021
Sequence Type Exemplar sequence
Representative Public ID Y2H9A.4 NCBI
Target Description Y2H9A.4 /REP_DB=WormBase Gene ID /WP=CE21292 /TR=P91990 /GB=CAA16278.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073934 NCBI Caenorhabditis elegans Y2H9A.4 (Y2H9A.4) mRNA, complete cds. 11/11 None
SNAP00000006460 ENSEMBL cdna:SNAP chromosome:CEL140:V:13449754:13451406:1 10/11 None
GENEFINDER00000006470 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13449720:13455593:1 11/11 None
Y2H9A.4 ENSEMBL cdna:known chromosome:CEL140:V:13447126:13451406:1 gene:Y2H9A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13447125-13451406(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y2H9A.4
Entrez Gene 189352 Entrez gene
SwissProt P91990 EMBL-EBI
WormBase CE21292 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02996 Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] emb|CAA16278.1| Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] ref|NP_506335.1| Y2H9A.4 [Caenorhabditis elegans] 0.0
blast CAB02996 Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] emb|CAA16278.1| Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] ref|NP_506335.1| Y2H9A.4 [Caenorhabditis elegans] 1.0E-166
blast CAB02996 Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] emb|CAA16278.1| Hypothetical protein Y2H9A.4 [Caenorhabditis elegans] ref|NP_506335.1| Y2H9A.4 [Caenorhabditis elegans] 1.0E-157
blast CAE62588 Hypothetical protein CBG06702 [Caenorhabditis briggsae] 3.0E-28
blast CAE62589 Hypothetical protein CBG06703 [Caenorhabditis briggsae] 2.0E-25
blast AAB52295 Hypothetical protein ZC196.5 [Caenorhabditis elegans] ref|NP_505248.1| ZC196.5 [Caenorhabditis elegans] 2.0E-23
Protein Domains
Database ID Description E-Value
scop a.2.1.GreA transcript cleavage protein, N-terminal domain All alpha proteins; Long alpha-hairpin; GreA transcript cleavage protein, N-terminal domain; GreA transcript cleavage protein, N-terminal domain 2.59999990463257
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 1.0E-105
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 1.2E-95
Pfam IPR006874 EMBL-EBI Protein of unknown function DUF621 9.7E-18
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 1.0E-105
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506335.1 1 235-257
Y2H9A.4 1 235-257
GENEFINDER00000006470 3 396-418,444-463,483-505
Sequence
Target Sequence 
>C. ELEGANS:178998_AT
aagactttctgctttcatgacatgcattcgtttaacaattcgatttgagcagaaagagga
agaatggtcagatgtgctcaatagtttcagaaagcctcttatcaaagctgttcaggcaca
tcatgatcttgtaaatgagtttcaaaaatccagaaaagtaaattacgaggaatcagatct
acagctggaagcaaaaatttttggagaagtccttgagaatgctcaatacgcaatgtacga
agcatacaaaaagttggctcagattactgaaactcatgatgatcggatatttttgaaaat
aataatgaaatcggtgagcttggctggacagaagtgcgatgaaatcggaaacatgcttct
tgaagtcaaaaacataccattggattctaaacttcaagaagacctcacaaaaatattatc
acaattggatccacactccattccaacaacatcaagtataaaaagtacatcaaaaactgc
aagtactgaagattatgaaaatattaaagctgtgccatatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTTTCTGCTTTCATGACATGC 628 153 1560 Antisense
ATGACATGCATTCGTTTAACAATTC 365 45 1576 Antisense
GGTCAGATGTGCTCAATAGTTTCAG 496 503 1625 Antisense
GAAAGCCTCTTATCAAAGCTGTTCA 392 359 1649 Antisense
AGCTGTTCAGGCACATCATGATCTT 290 81 1665 Antisense
GGAATCAGATCTACAGCTGGAAGCA 304 533 1728 Antisense
GAAATCGGTGAGCTTGGCTGGACAG 209 363 1866 Antisense
GGCTGGACAGAAGTGCGATGAAATC 58 541 1881 Antisense
ATCGGAAACATGCTTCTTGAAGTCA 628 33 1903 Antisense
CACAATTGGATCCACACTCCATTCC 677 193 1979 Antisense
AAATATTAAAGCTGTGCCATATCCC 7 117 2058 Antisense
Sequence Source Affymetrix Proprietary Database