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[178997_at]

Description F21A3.1 /REP_DB=WormBase Gene ID /WP=CE09515 /TR=O17826 /GB=CAB04154.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 19      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 86.9
(-0.7)
P 		87.6
(-0.6)
A 		57.2
(-3)
A 		133.9
(3)
M 		77
B 81.5
(-3)
P 		87.7
(-1.1)
A 		86.4
(-1.5)
P 		101.3
(3)
P 		20
C 103.4
(-2.1)
P 		124.2
(-0.5)
M 		91.5
(-3)
A 		170.7
(3)
P 		79
avr 90.6
(-1.7) 		99.8
(-0.7) 		78.4
(-3) 		135.3
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 73.1
(0.6)
A 		94.1
(3)
P 		57.8
(-1.1)
A 		41
(-3)
A 		42.2
(-2.9)
A 		70.9
(0.4)
A 		53
B 91.6
(3)
A 		53.3
(-0.9)
A 		55.7
(-0.7)
M 		52.8
(-0.9)
A 		70.7
(0.9)
A 		32.6
(-3)
A 		59
C 100.7
(3)
P 		54.5
(-1.5)
P 		75.7
(0.5)
A 		45.7
(-2.4)
A 		39.5
(-3)
A 		53.5
(-1.6)
M 		61
avr 88.5
(3) 		67.3
(-0) 		63.1
(-0.6) 		46.5
(-3) 		50.8
(-2.4) 		52.3
(-2.2) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 31.6
(3)
P 		19
(-1.6)
A 		15
(-3)
A 		19.6
(-1.3)
M 		17
B 26
(3)
P 		21.7
(-1.3)
A 		20
(-3)
P 		21.6
(-1.4)
P 		6
C 34.2
(1.7)
P 		35.7
(3)
M 		31.9
(-0.3)
A 		28.8
(-3)
P 		7
avr 30.6
(3) 		25.5
(-0.7) 		22.3
(-3) 		23.3
(-2.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.5
(-2.2)
A 		33.5
(3)
P 		12.6
(-2.4)
A 		10.4
(-3)
A 		12.7
(-2.4)
A 		17.3
(-1.2)
A 		23
B 31.9
(3)
A 		17.7
(-1.3)
A 		13.5
(-2.6)
M 		14
(-2.5)
A 		28.7
(2)
A 		12.2
(-3)
A 		20
C 37.3
(3)
P 		16.6
(-1.4)
P 		19.3
(-0.8)
A 		9.2
(-3)
A 		12.8
(-2.2)
A 		17.9
(-1.1)
M 		28
avr 27.6
(3) 		22.6
(1.2) 		15.1
(-1.6) 		11.2
(-3) 		18.1
(-0.5) 		15.8
(-1.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178997_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13146
Sequence Type Exemplar sequence
Representative Public ID F21A3.1 NCBI
Target Description F21A3.1 /REP_DB=WormBase Gene ID /WP=CE09515 /TR=O17826 /GB=CAB04154.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074462 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-276) (srh-276) mRNA, complete cds. 11/11 None
SNAP00000007990 ENSEMBL cdna:SNAP chromosome:CEL140:V:15532013:15533350:1 11/11 None
F21A3.1 ENSEMBL cdna:known chromosome:CEL140:V:15531953:15533351:1 gene:F21A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15531952-15533350(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-276
Ensembl F21A3.1
Entrez Gene 184747 Entrez gene
SwissProt O17826 EMBL-EBI
WormBase CE09515 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04154 Hypothetical protein F21A3.1 [Caenorhabditis elegans] ref|NP_506863.1| Serpentine Receptor, class H family member (srh-276) [Caenorhabditis elegans] 0.0
blast CAB04154 Hypothetical protein F21A3.1 [Caenorhabditis elegans] ref|NP_506863.1| Serpentine Receptor, class H family member (srh-276) [Caenorhabditis elegans] 1.0E-159
blast CAE71623 Hypothetical protein CBG18587 [Caenorhabditis briggsae] 4.0E-89
blast CAE71623 Hypothetical protein CBG18587 [Caenorhabditis briggsae] 8.0E-78
blast G88979 protein F37B4.5 [imported] - Caenorhabditis elegans 8.0E-53
blast G88979 protein F37B4.5 [imported] - Caenorhabditis elegans 2.0E-41
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 2.0
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.79999995231628
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.8E-103
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506863.1 7 20-41,54-76,96-118,139-158,194-216,237-259,274-296
F21A3.1 7 20-41,54-76,96-118,139-158,194-216,237-259,274-296
SNAP00000007990 7 4-21,34-56,76-98,119-138,174-196,203-225,235-254
Sequence
Target Sequence 
>C. ELEGANS:178997_AT
aaagctgctggaagcacctacgtcggccctggctgatcctcaactacacaatctgcgttg
tttacatgattcctacttatctatcaattcctgatcagaaaactggaaaagcctatcaat
tctcgaaatatccatgtcttccccaagaggtttacgatgagaaagtgtttttattgacta
cctggagcactggttacgcgtataatatgagcctgaacaccgctgtacaacaaacgctga
tttttgtgtttttgatttattggaatatgcgaaagtcgatggtcgaggtgaaaatgtcaa
aaaggacattggatatgcataggacttttttgaagactataatattgcaggtaacaatcc
cccttatcacagtgatgggtccgctgatgctcaatttcttcacaatttacaattcctact
acaatcagggagccaataatctatcaatttccatgatggccacccatggattagtgtctt
cacttgcaatgatctacctccataagtcttattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTGCTGGAAGCACCTACGTCG 613 123 398 Antisense
GATCCTCAACTACACAATCTGCGTT 219 417 432 Antisense
GATTCCTACTTATCTATCAATTCCT 85 433 465 Antisense
TCCATGTCTTCCCCAAGAGGTTTAC 366 591 528 Antisense
GACTACCTGGAGCACTGGTTACGCG 130 369 573 Antisense
TGAGCCTGAACACCGCTGTACAACA 7 285 605 Antisense
CAATCCCCCTTATCACAGTGATGGG 226 179 752 Antisense
TCCGCTGATGCTCAATTTCTTCACA 213 597 777 Antisense
GATGGCCACCCATGGATTAGTGTCT 169 407 852 Antisense
GTGTCTTCACTTGCAATGATCTACC 379 487 871 Antisense
TGATCTACCTCCATAAGTCTTATTG 229 565 887 Antisense
Sequence Source Affymetrix Proprietary Database