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[178995_at]

Description C26E1.3 /REP_DB=WormBase Gene ID /WP=CE08402 /TR=O02224 /GB=CAB02783.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 54      6grp_total > 45      4grp_total > 56      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 124.8
(-1.1)
P 		91.2
(-3)
A 		196.2
(3)
P 		115
(-1.6)
M 		105
B 94.4
(-3)
P 		155.1
(3)
A 		107.3
(-1.7)
A 		124.2
(-0.1)
P 		61
C 149.3
(1.8)
P 		82.4
(-3)
A 		166.6
(3)
P 		122.2
(-0.2)
P 		84
avr 122.8
(-1.3) 		109.6
(-3) 		156.7
(3) 		120.5
(-1.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 116.9
(-1.2)
P 		144.6
(3)
P 		104.7
(-3)
A 		110.4
(-2.1)
A 		122.5
(-0.3)
A 		116.4
(-1.2)
P 		40
B 136.1
(1.7)
P 		133.4
(1.2)
P 		144.1
(3)
A 		108.5
(-3)
P 		120.6
(-1)
P 		132.8
(1.1)
P 		36
C 117.4
(-0.8)
P 		124.6
(-0.2)
P 		146.5
(1.7)
P 		100.9
(-2.2)
M 		91.6
(-3)
P 		162.2
(3)
P 		71
avr 123.5
(0.3) 		134.2
(2.4) 		131.8
(2) 		106.6
(-3) 		111.6
(-2) 		137.1
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 45.5
(2)
P 		19.8
(-2.5)
A 		51.3
(3)
P 		16.8
(-3)
M 		35
B 30.1
(-0.7)
P 		38.3
(3)
A 		24.9
(-3)
A 		26.5
(-2.3)
P 		13
C 49.4
(1.6)
P 		23.7
(-2.5)
A 		58.1
(3)
P 		20.6
(-3)
P 		38
avr 41.7
(2.2) 		27.3
(-1.5) 		44.8
(3) 		21.3
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 21.5
(-3)
P 		51.4
(3)
P 		22.8
(-2.7)
A 		28
(-1.7)
A 		37
(0.1)
A 		28.3
(-1.6)
P 		30
B 47.3
(2.4)
P 		44.4
(1.5)
P 		35
(-1.2)
A 		28.7
(-3)
P 		49
(2.9)
P 		49.5
(3)
P 		21
C 43.5
(1.1)
P 		38
(0.1)
P 		37.3
(-0)
P 		20.3
(-3)
M 		29.6
(-1.4)
P 		54.3
(3)
P 		34
avr 37.4
(0.7) 		44.6
(3) 		31.7
(-1.1) 		25.7
(-3) 		38.5
(1.1) 		44
(2.8) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178995_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13404
Sequence Type Exemplar sequence
Representative Public ID C26E1.3 NCBI
Target Description C26E1.3 /REP_DB=WormBase Gene ID /WP=CE08402 /TR=O02224 /GB=CAB02783.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073894(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073894 NCBI Caenorhabditis elegans C26E1.3 (C26E1.3) mRNA, complete cds. 10/11 None
GENEFINDER00000016625 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13304567:13307115:1 9/11 None
C26E1.3 ENSEMBL cdna:known chromosome:CEL140:V:13304244:13307339:1 gene:C26E1.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016621 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13304283-13307170(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26E1.3
Entrez Gene 179809 Entrez gene
SwissProt O02224 EMBL-EBI
WormBase CE31885 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02783 Hypothetical protein C26E1.3 [Caenorhabditis elegans] ref|NP_506295.2| C26E1.3 [Caenorhabditis elegans] 0.0
blast CAE62625 Hypothetical protein CBG06752 [Caenorhabditis briggsae] 1.0E-116
blast CAE62625 Hypothetical protein CBG06752 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:178995_AT
cctccacaatttcagttgacgccatcagaacgacaaattctccgtcgttattggaacgca
ggaaatcgacatgtaactacaacagaatgcatttttctagcaagaagatgcccgagcttg
gcgccattccaagtgtacgggttttttgataagcgtcgtagaagagaatataataaatat
cgtggcttgaaagacgatgaaactttggctctggagaccactcaagtctggaaaaagctg
agagagctgaaaggaggcattgatgatgatgagagtgatgaggacgatgagttgttaatt
cagagagaatttctttcgaaagatgataataagaaactggaactcttgtggcaagttggc
catcgaaagccgagtcgtaacgagtgtgagattcttgctgctgaaatgcaaatggacaat
ggagagcagcatgttaacctatttcgaatattttcaagctactcaagtttcaagtataca
aatcattatcaattccgatatttgcttacttcgaagaccgccgttggcatgacgaatatc
aaaaccgaaagcgatcatgctcctcaagaagataataacttccgccgaatttccatatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCCACAATTTCAGTTGACGCCAT 60 267 739 Antisense
CAAGAAGATGCCCGAGCTTGGCGCC 226 185 839 Antisense
GCGCCATTCCAAGTGTACGGGTTTT 457 285 859 Antisense
ACTTTGGCTCTGGAGACCACTCAAG 557 101 940 Antisense
TGGCCATCGAAAGCCGAGTCGTAAC 674 543 1095 Antisense
ACGAGTGTGAGATTCTTGCTGCTGA 445 93 1118 Antisense
GAGAGCAGCATGTTAACCTATTTCG 346 395 1160 Antisense
TATTTGCTTACTTCGAAGACCGCCG 342 661 1237 Antisense
GAAGACCGCCGTTGGCATGACGAAT 654 337 1251 Antisense
AACCGAAAGCGATCATGCTCCTCAA 397 147 1281 Antisense
TAACTTCCGCCGAATTTCCATATAC 676 637 1314 Antisense
Sequence Source Affymetrix Proprietary Database