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[178994_at]

Description C49A1.6 /REP_DB=WormBase Gene ID /WP=CE15724 /TR=O17672 /GB=CAB05704.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 13.3
(-1.4)
A 		26.4
(3)
A 		8.4
(-3)
A 		19
(0.5)
A 		18
B 6.3
(-2.5)
A 		47.6
(3)
A 		8.3
(-2.3)
A 		2.9
(-3)
A 		45
C 11.6
(-3)
A 		33.5
(1.2)
A 		24.2
(-0.6)
A 		43.1
(3)
A 		32
avr 10.4
(-3) 		35.8
(3) 		13.6
(-2.2) 		21.7
(-0.3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 40
(3)
A 		31.3
(1.5)
A 		4.1
(-3)
A 		9
(-2.2)
A 		7.7
(-2.4)
A 		7
(-2.5)
A 		36
B 3.4
(-2.9)
A 		50.5
(3)
A 		7.4
(-2.4)
A 		9
(-2.2)
A 		2.5
(-3)
A 		2.7
(-3)
A 		48
C 5.7
(-2.9)
A 		31
(0.3)
A 		6.4
(-2.8)
A 		52.1
(3)
A 		5.1
(-3)
A 		25.5
(-0.4)
A 		47
avr 16.4
(-0.9) 		37.6
(3) 		6
(-2.8) 		23.4
(0.4) 		5.1
(-3) 		11.7
(-1.8) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.8
(1.5)
A 		5.7
(3)
A 		2.2
(-3)
A 		2.8
(-2)
A 		4
B 2
(-2.3)
A 		11.8
(3)
A 		1.9
(-2.3)
A 		0.6
(-3)
A 		11
C 3.8
(-3)
A 		9.6
(3)
A 		8.4
(1.8)
A 		7.3
(0.6)
A 		6
avr 3.5
(-3) 		9
(3) 		4.2
(-2.2) 		3.6
(-2.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.4
(0.8)
A 		11.1
(3)
A 		0.9
(-3)
A 		2.3
(-2.2)
A 		2.3
(-2.2)
A 		1.7
(-2.5)
A 		10
B 1.2
(-2.9)
A 		16.8
(3)
A 		1.8
(-2.7)
A 		2.4
(-2.5)
A 		1
(-3)
A 		1
(-3)
A 		16
C 2.1
(-2.7)
A 		9.4
(2.3)
A 		1.6
(-3)
A 		10.5
(3)
A 		1.7
(-2.9)
A 		8.5
(1.7)
A 		9
avr 3.6
(-1.8) 		12.4
(3) 		1.4
(-3) 		5.1
(-1) 		1.7
(-2.8) 		3.7
(-1.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.782
Sequence Type Exemplar sequence
Representative Public ID C49A1.6 NCBI
Target Description C49A1.6 /REP_DB=WormBase Gene ID /WP=CE15724 /TR=O17672 /GB=CAB05704.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061086 NCBI Caenorhabditis elegans C49A1.6 (C49A1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000008668 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14254346:14256889:1 10/11 None
SNAP00000008662 ENSEMBL cdna:SNAP chromosome:CEL140:I:14254488:14255432:1 10/11 None
C49A1.6 ENSEMBL cdna:known chromosome:CEL140:I:14254346:14255432:1 gene:C49A1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14254276-14255363(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A1.6
Entrez Gene 183588 Entrez gene
SwissProt O17672 EMBL-EBI
WormBase CE15724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05704 Hypothetical protein C49A1.6 [Caenorhabditis elegans] ref|NP_493487.1| C49A1.6 [Caenorhabditis elegans] 1.0E-176
blast CAB05704 Hypothetical protein C49A1.6 [Caenorhabditis elegans] ref|NP_493487.1| C49A1.6 [Caenorhabditis elegans] 1.0E-165
blast CAB05704 Hypothetical protein C49A1.6 [Caenorhabditis elegans] ref|NP_493487.1| C49A1.6 [Caenorhabditis elegans] 1.0E-146
blast CAB04563 Hypothetical protein K04H8.1 [Caenorhabditis elegans] ref|NP_493489.1| K04H8.1 [Caenorhabditis elegans] 1.0E-59
blast CAB04563 Hypothetical protein K04H8.1 [Caenorhabditis elegans] ref|NP_493489.1| K04H8.1 [Caenorhabditis elegans] 8.0E-59
blast CAB04563 Hypothetical protein K04H8.1 [Caenorhabditis elegans] ref|NP_493489.1| K04H8.1 [Caenorhabditis elegans] 3.0E-57
blast CAE71785 Hypothetical protein CBG18789 [Caenorhabditis briggsae] 2.0E-54
blast CAE71785 Hypothetical protein CBG18789 [Caenorhabditis briggsae] 6.0E-52
Sequence
Target Sequence 
>C. ELEGANS:178994_AT
gtgaagatcatctccaacttgaccagctgcgcctctaccgcagctggaaactccttgcaa
agtctgatagaacctgatcaaccctacaacatcaccatatctctggacacctggactatc
cggcagcctcccaagtgcccggagaacttccaaatctttgagagaccgttagggtcatgg
tgcatcggggtaggcttaacagaaataatgttgcctattgttaatgttcaggtaatcact
caacaaaaagccactcagccagaaggcaccaggtactgccgggaggtgtacaatggagtt
cttagtggattcgataataacacggagaaggaatttgttgtcaagagcacaaagggtacg
gtagccagtggaaatgggtaccaaggcgatgcatattgggtgaatggggagcggaagagc
agttgtatgtggaaaaatcaaactgggccggactgtgagggagttaaggccttcacaata
accgacccactaatctccacgatctcctacaattgggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAGATCATCTCCAACTTGACCA 617 481 289 Antisense
GCTGGAAACTCCTTGCAAAGTCTGA 127 295 331 Antisense
GATAGAACCTGATCAACCCTACAAC 114 421 354 Antisense
CCCTACAACATCACCATATCTCTGG 632 259 370 Antisense
ATATCTCTGGACACCTGGACTATCC 696 19 385 Antisense
GACCGTTAGGGTCATGGTGCATCGG 391 159 452 Antisense
GGTGCATCGGGGTAGGCTTAACAGA 340 499 467 Antisense
AAAGCCACTCAGCCAGAAGGCACCA 553 123 535 Antisense
GCACCAGGTACTGCCGGGAGGTGTA 275 201 554 Antisense
CAAACTGGGCCGGACTGTGAGGGAG 506 177 727 Antisense
TCTCCACGATCTCCTACAATTGGGG 455 609 782 Antisense
Sequence Source Affymetrix Proprietary Database