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[178993_at]

Description K02D3.1 /REP_DB=WormBase Gene ID /WP=CE06069 /TR=Q21131 /GB=CAA94146.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 92      4grp_total > 46      6grp_high1_sub > 05      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 233.2
(3)
P 		156.5
(0.8)
M 		22.8
(-3)
A 		32.2
(-2.7)
A 		210
B 263.4
(3)
P 		126.3
(-0.4)
P 		20.8
(-3)
A 		55.4
(-2.1)
M 		243
C 216.4
(3)
P 		82.1
(-1.2)
P 		23.6
(-3)
A 		66.9
(-1.7)
A 		193
avr 237.7
(3) 		121.6
(-0.2) 		22.4
(-3) 		51.5
(-2.2) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 105.9
(2.1)
A 		68.2
(-1.7)
P 		58.1
(-2.7)
P 		104.1
(2)
A 		114.4
(3)
P 		55.5
(-3)
P 		59
B 67.8
(-1.1)
P 		105.4
(2.1)
P 		51.4
(-2.4)
P 		92.9
(1)
P 		116.6
(3)
P 		44.4
(-3)
A 		72
C 109
(-0.3)
P 		99.4
(-1.5)
P 		93.4
(-2.3)
M 		124.4
(1.8)
M 		133.9
(3)
P 		88.1
(-3)
P 		46
avr 94.2
(0.2) 		91
(-0.1) 		67.6
(-2.5) 		107.1
(1.5) 		121.6
(3) 		62.7
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 84.9
(3)
P 		34
(-0.8)
M 		6
(-2.9)
A 		4.7
(-3)
A 		80
B 84
(3)
P 		31.2
(-1)
P 		4.8
(-3)
A 		11.8
(-2.5)
M 		79
C 71.7
(3)
P 		23.6
(-1.5)
P 		8.2
(-3)
A 		11.3
(-2.7)
A 		64
avr 80.2
(3) 		29.6
(-1.1) 		6.3
(-3) 		9.3
(-2.8) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 19.5
(-1.1)
A 		24.3
(0.2)
P 		12.7
(-3)
P 		26.4
(0.8)
A 		34.5
(3)
P 		13.5
(-2.8)
P 		22
B 23.6
(-1.1)
P 		35.1
(0.9)
P 		12.5
(-3)
P 		24.6
(-0.9)
P 		47.4
(3)
P 		16.6
(-2.3)
A 		35
C 40.4
(2.1)
P 		30.3
(-1)
P 		23.8
(-3)
M 		25
(-2.6)
M 		43.3
(3)
P 		29.5
(-1.2)
P 		20
avr 27.8
(-0.3) 		29.9
(0.2) 		16.3
(-3) 		25.3
(-0.9) 		41.7
(3) 		19.9
(-2.1) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17850
Sequence Type Exemplar sequence
Representative Public ID K02D3.1 NCBI
Target Description K02D3.1 /REP_DB=WormBase Gene ID /WP=CE06069 /TR=Q21131 /GB=CAA94146.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077891 NCBI Caenorhabditis elegans K02D3.1 (K02D3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000025369 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13706847:13707556:1 11/11 None
K02D3.1 ENSEMBL cdna:known chromosome:CEL140:X:13706847:13707556:1 gene:K02D3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025367 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13706846-13707556(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02D3.1
Entrez Gene 186872 Entrez gene
SwissProt Q21131 EMBL-EBI
WormBase CE06069 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94146 Hypothetical protein K02D3.1 [Caenorhabditis elegans] ref|NP_510292.1| K02D3.1 [Caenorhabditis elegans] 3.0E-93
blast AAA20673 Hypothetical protein T22F7.4 [Caenorhabditis elegans] ref|NP_497208.1| T22F7.4 [Caenorhabditis elegans] 5.0E-25
blast CAE63096 Hypothetical protein CBG07386 [Caenorhabditis briggsae] 8.0E-21
Sequence
Target Sequence 
>C. ELEGANS:178993_AT
attggtagcaatcctacttctcctttctgcctgctcttcctcgatgaactgtgcggtcat
aatatcagacgaccaaataatatttttagtcaatagaatttgcacaaagtccatgacttg
cccatacaaagaatatgcgtccatccaaccacgagactgggtctggaacagggatgctgt
cctaacagcacccagcgttcagttgtacaaagctggaaaagtgccaaaaatgcaagtgat
cgacttgttccaggagcagttttgttgcgcttcagaagaatgcctagcacgttgcaacat
tgtcgagataagagagaaaccattagtacaatttgtattggaaaacttcccgaaaaatgc
gccaaaaattctttccttggagttggaagagttaaaggattttgaaaaaccgattcgcaa
ctacatcaacgatttaaaacataacaaggatctcaaatttgttccagccgaggttgaaga
ttttctcgactacttagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGTAGCAATCCTACTTCTCCTT 493 3 21 Antisense
TCTTCCTCGATGAACTGTGCGGTCA 617 617 55 Antisense
AGTCCATGACTTGCCCATACAAAGA 698 59 128 Antisense
AAAGAATATGCGTCCATCCAACCAC 207 123 148 Antisense
CATCCAACCACGAGACTGGGTCTGG 427 209 162 Antisense
AGGGATGCTGTCCTAACAGCACCCA 309 59 190 Antisense
CACCCAGCGTTCAGTTGTACAAAGC 512 97 209 Antisense
GGAGCAGTTTTGTTGCGCTTCAGAA 196 521 273 Antisense
ATGCCTAGCACGTTGCAACATTGTC 387 41 300 Antisense
AAATGCGCCAAAAATTCTTTCCTTG 267 117 375 Antisense
GAAGATTTTCTCGACTACTTAGACA 653 335 496 Antisense
Sequence Source Affymetrix Proprietary Database