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[178992_at]

Description ZC116.1 /REP_DB=WormBase Gene ID /WP=CE06564 /TR=Q23241 /GB=CAA98556.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 86.8
(-2.7)
A 		106.9
(-1.7)
A 		79.5
(-3)
A 		205.1
(3)
P 		126
B 75.9
(-2)
A 		131.2
(0.2)
A 		52.3
(-3)
A 		200.7
(3)
P 		148
C 42.4
(-3)
A 		122.8
(1.5)
A 		132.4
(2)
A 		150.1
(3)
P 		108
avr 68.4
(-3) 		120.3
(-0.3) 		88.1
(-2) 		185.3
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 81.7
(-3)
A 		125.4
(-0.3)
A 		159.4
(1.8)
P 		155.4
(1.5)
A 		179.1
(3)
P 		137.3
(0.4)
P 		97
B 52.3
(-3)
A 		190.2
(1.2)
P 		158.2
(0.2)
P 		247.9
(3)
P 		167.7
(0.5)
P 		176.5
(0.8)
P 		196
C 27.7
(-3)
A 		293.4
(3)
P 		103.7
(-1.3)
M 		103.4
(-1.3)
P 		112.4
(-1.1)
M 		249.3
(2)
P 		266
avr 53.9
(-3) 		203
(3) 		140.4
(0.5) 		168.9
(1.6) 		153.1
(1) 		187.7
(2.4) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 31.6
(3)
A 		23.2
(-1.7)
A 		20.8
(-3)
A 		30
(2.1)
P 		11
B 24.2
(-0.6)
A 		32.4
(1)
A 		12.1
(-3)
A 		42.8
(3)
P 		31
C 14
(-3)
A 		35.3
(1)
A 		46.1
(3)
A 		25.3
(-0.9)
P 		32
avr 23.3
(-3) 		30.3
(1.5) 		26.3
(-1.1) 		32.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 15.1
(-3)
A 		44.6
(1.5)
A 		34.7
(0)
P 		39.4
(0.7)
A 		54.1
(3)
P 		33.4
(-0.2)
P 		39
B 18.2
(-3)
A 		63.3
(2.4)
P 		38.4
(-0.6)
P 		65.7
(2.7)
P 		68.1
(3)
P 		65.8
(2.7)
P 		50
C 10.3
(-3)
A 		89.5
(3)
P 		26.4
(-1.8)
M 		20.8
(-2.2)
P 		36.4
(-1)
M 		83.5
(2.5)
P 		79
avr 14.5
(-3) 		65.8
(3) 		33.2
(-0.8) 		42
(0.2) 		52.9
(1.5) 		60.9
(2.4) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13080
Sequence Type Exemplar sequence
Representative Public ID ZC116.1 NCBI
Target Description ZC116.1 /REP_DB=WormBase Gene ID /WP=CE06564 /TR=Q23241 /GB=CAA98556.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000043951 ENSEMBL cdna:SNAP chromosome:CEL140:V:12612796:12613299:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043949 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043956 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12610759-12613299(-) 81.83 100.0
Sequence
Target Sequence 
>C. ELEGANS:178992_AT
gaagagtttgttgttgctgaccctgttgcgtttgttgtggataatactgttgttgttgtt
gttgggttccttgagcatactgttggttttgttgtggttgctgttgagcataagcttgtt
gggaagctccaccagcctgagtttgctgagcaactccagtggtaccagcaactgcagcgt
ttccttgctctgttctcccttcttgctgtggcctctgcgcaacacttgtactatccaacg
agctattatactccatactattactattatcctacagctacagttggtgcagcagccacc
caacaaacagattttagtaatcaacaaatatatgcccaacaacctcaacaacagcagact
caatatgcacagggaaatcaacaatatagtggaacagttcaacgagatcaatctggaaat
gttcaacaaacaggatcggttgcagcagcagctcaacctctgtactattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGTTTGTTGTTGCTGACCCTG 278 339 238 Antisense
CTGACCCTGTTGCGTTTGTTGTGGA 251 239 254 Antisense
TGTTGGGTTCCTTGAGCATACTGTT 518 563 297 Antisense
GCTCCACCAGCCTGAGTTTGCTGAG 669 297 363 Antisense
TGCTGAGCAACTCCAGTGGTACCAG 120 581 381 Antisense
TGGTACCAGCAACTGCAGCGTTTCC 567 551 397 Antisense
CTCTGCGCAACACTTGTACTATCCA 388 231 450 Antisense
TACAGTTGGTGCAGCAGCCACCCAA 331 643 516 Antisense
AATATATGCCCAACAACCTCAACAA 677 173 564 Antisense
ACAGGATCGGTTGCAGCAGCAGCTC 370 107 667 Antisense
AGCAGCTCAACCTCTGTACTATTAC 402 77 684 Antisense
Sequence Source Affymetrix Proprietary Database