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[178991_s_at]

Description F21G4.6 /REP_DB=WormBase Gene ID /WP=CE09552 /TR=Q93547 /GB=CAB02662.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 31      4grp_high_8_8 > 03      6grp_highest_nonorm > 90      6grp_total > 33      4grp_total > 13      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 187.4
(-0.1)
P 		129.3
(-3)
P 		147.5
(-2.1)
P 		248
(3)
P 		119
B 151.4
(0.1)
P 		127.3
(-0.7)
P 		60.7
(-3)
A 		237.5
(3)
P 		177
C 205.2
(2.9)
P 		110.3
(-3)
P 		130.1
(-1.8)
P 		206.8
(3)
P 		97
avr 181.3
(0.5) 		122.3
(-2.5) 		112.8
(-3) 		230.8
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 181.8
(2.1)
P 		176.7
(1.8)
P 		194.5
(3)
P 		146.6
(-0.2)
P 		106
(-3)
P 		160.6
(0.7)
P 		89
B 211.3
(2.8)
P 		173
(0.3)
P 		213.8
(3)
P 		123.4
(-3)
P 		191.9
(1.5)
P 		125.7
(-2.8)
P 		90
C 178.6
(1.1)
P 		186.1
(1.5)
P 		212
(3)
P 		179.3
(1.1)
P 		151.6
(-0.5)
P 		107
(-3)
P 		105
avr 190.6
(1.7) 		178.6
(0.8) 		206.8
(3) 		149.8
(-1.5) 		149.8
(-1.5) 		131.1
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 68.2
(3)
P 		28.1
(-3)
P 		38.6
(-1.4)
P 		36.3
(-1.8)
P 		40
B 48.3
(2.6)
P 		31.4
(-0.2)
P 		14.1
(-3)
A 		50.6
(3)
P 		37
C 67.9
(3)
P 		31.7
(-3)
P 		45.4
(-0.7)
P 		34.9
(-2.5)
P 		36
avr 61.5
(3) 		30.4
(-3) 		32.7
(-2.6) 		40.6
(-1) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 33.5
(-2.7)
P 		62.8
(3)
P 		42.4
(-1)
P 		37.2
(-2)
P 		32
(-3)
P 		39.1
(-1.6)
P 		31
B 73.5
(2.4)
P 		57.6
(0.3)
P 		51.9
(-0.5)
P 		32.7
(-3)
P 		77.9
(3)
P 		46.9
(-1.1)
P 		45
C 66.2
(3)
P 		56.8
(1.1)
P 		53.9
(0.6)
P 		36.1
(-2.9)
P 		49.1
(-0.4)
P 		35.8
(-3)
P 		30
avr 57.7
(2.6) 		59.1
(3) 		49.4
(0.6) 		35.3
(-3) 		53
(1.5) 		40.6
(-1.7) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178991_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16055
Sequence Type Exemplar sequence
Representative Public ID F21G4.6 NCBI
Target Description F21G4.6 /REP_DB=WormBase Gene ID /WP=CE09552 /TR=Q93547 /GB=CAB02662.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077262 NCBI Caenorhabditis elegans F21G4.6 (F21G4.6) mRNA, complete cds. 11/11 None
SNAP00000036634 ENSEMBL cdna:SNAP chromosome:CEL140:X:9908844:9917374:-1 11/11 None
GENEFINDER00000036636 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9908844:9917374:-1 11/11 None
F21G4.6 ENSEMBL cdna:known chromosome:CEL140:X:9908744:9917374:-1 gene:F21G4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9908843-9917374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21G4.6
Entrez Gene 181204 Entrez gene
SwissProt Q93547 EMBL-EBI
WormBase CE37360 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02662 Hypothetical protein F21G4.6 [Caenorhabditis elegans] ref|NP_509663.2| F21G4.6 [Caenorhabditis elegans] 0.0
blast CAE58736 Hypothetical protein CBG01923 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178991_S_AT
acgatacttaaacttctgcttgcatcgatgagagttcgtagggaacgatttattattgag
cttatcgccgaaggaatagagcagttattgtgtagatctaacgagtttaataatgaagtg
atcaattttgttcttgttggggtggattcaggagacgcaactccatttccagcagacaat
gagtactactgcagagctgtgtatcggatactgatggttgcagcaacaagagagaaagta
gctaacgatgaagtgtcgatgacacgaatttacaatgcacttcagattatcggcttcgac
atgctcagtcgtggtgaaacggctcctgctatctcccgaacacttccatttttttcaatt
tgtgtcaatggagtggaaaccacaatttccaaatatattgaacgatttgttatcaatgga
aataaaaaggatcgacgattcgtgtcaactttaattaatcagatagttgaaacagcagca
acatcaaagaagtggtctgttgaactgaaattgtatcgtgaacggcttaaatcaaaatca
gtagctaatgccgacgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATACTTAAACTTCTGCTTGCAT 149 93 4576 Antisense
CTTCTGCTTGCATCGATGAGAGTTC 246 221 4588 Antisense
ATTATTGAGCTTATCGCCGAAGGAA 13 3 4627 Antisense
GGGGTGGATTCAGGAGACGCAACTC 9 499 4714 Antisense
GCAACTCCATTTCCAGCAGACAATG 195 319 4732 Antisense
ACTGCAGAGCTGTGTATCGGATACT 544 97 4763 Antisense
GACACGAATTTACAATGCACTTCAG 593 365 4836 Antisense
CGGCTTCGACATGCTCAGTCGTGGT 103 243 4866 Antisense
TCAGTCGTGGTGAAACGGCTCCTGC 425 619 4880 Antisense
AAGGATCGACGATTCGTGTCAACTT 174 161 5002 Antisense
AAATCAGTAGCTAATGCCGACGATA 234 117 5110 Antisense
Sequence Source Affymetrix Proprietary Database