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[178990_at]

Description T23F1.3 /REP_DB=WormBase Gene ID /WP=CE14074 /TR=O18122 /GB=CAB03408.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 25.6
(-2.8)
A 		30.2
(-2.3)
A 		85.5
(3)
A 		23.2
(-3)
A 		62
B 77.8
(3)
A 		63.9
(1.4)
A 		26.1
(-3)
A 		63.9
(1.4)
A 		52
C 44.9
(-0.8)
A 		10.3
(-3)
A 		20
(-2.4)
A 		103.7
(3)
P 		93
avr 49.4
(0) 		34.8
(-3) 		43.9
(-1.1) 		63.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 69.4
(3)
A 		25.1
(-1.4)
A 		68.4
(2.9)
A 		27.1
(-1.2)
A 		47
(0.8)
A 		9.6
(-3)
A 		60
B 3.3
(-2.9)
A 		52.7
(3)
A 		21.6
(-0.7)
A 		12.8
(-1.8)
A 		38.2
(1.3)
A 		2.6
(-3)
A 		50
C 23.5
(-2.1)
A 		85.5
(3)
A 		32
(-1.4)
A 		13.1
(-3)
A 		27
(-1.8)
A 		27.2
(-1.8)
A 		72
avr 32.1
(-0.2) 		54.4
(3) 		40.7
(1) 		17.7
(-2.3) 		37.4
(0.5) 		13.1
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 9.3
(-1.1)
A 		6.6
(-2)
A 		22.3
(3)
A 		3.4
(-3)
A 		19
B 24.8
(3)
A 		15.8
(0.1)
A 		6
(-3)
A 		13.6
(-0.6)
A 		19
C 14.9
(1.9)
A 		3
(-3)
A 		7
(-1.3)
A 		17.5
(3)
P 		15
avr 16.3
(3) 		8.5
(-3) 		11.8
(-0.5) 		11.5
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12.8
(2)
A 		8.9
(0.1)
A 		14.9
(3)
A 		6.9
(-0.8)
A 		14.2
(2.7)
A 		2.3
(-3)
A 		13
B 1.2
(-2.9)
A 		17.6
(3)
A 		5.3
(-1.4)
A 		3.4
(-2.1)
A 		15.5
(2.2)
A 		1
(-3)
A 		17
C 8.7
(-1.4)
A 		26.1
(3)
A 		8.1
(-1.6)
A 		2.6
(-3)
A 		8.8
(-1.4)
A 		9.1
(-1.3)
A 		24
avr 7.6
(-1.4) 		17.5
(3) 		9.4
(-0.6) 		4.3
(-2.9) 		12.8
(0.9) 		4.1
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13327
Sequence Type Exemplar sequence
Representative Public ID T23F1.3 NCBI
Target Description T23F1.3 /REP_DB=WormBase Gene ID /WP=CE14074 /TR=O18122 /GB=CAB03408.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074445 NCBI Caenorhabditis elegans T23F1.3 (T23F1.3) mRNA, complete cds. 11/11 None
T23F1.3 ENSEMBL cdna:known chromosome:CEL140:V:15458651:15460030:-1 gene:T23F1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033153 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15458650-15460030(-) 99.15 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F1.3
Entrez Gene 188800 Entrez gene
SwissProt O18122 EMBL-EBI
WormBase CE14074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03408 Hypothetical protein T23F1.3 [Caenorhabditis elegans] ref|NP_506846.1| T23F1.3 [Caenorhabditis elegans] 0.0
blast CAB04174 Hypothetical protein F26D2.1 [Caenorhabditis elegans] ref|NP_507153.1| Seven TM Receptor family member (str-73) [Caenorhabditis elegans] 1.0E-122
blast CAB03407 Hypothetical protein T23F1.4 [Caenorhabditis elegans] ref|NP_506847.1| Seven TM Receptor family member (str-71) [Caenorhabditis elegans] 1.0E-109
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506846.1 7 10-31,43-65,85-107,128-150,200-222,249-271,286-308
T23F1.3 7 10-31,43-65,85-107,128-150,200-222,249-271,286-308
Sequence
Target Sequence 
>C. ELEGANS:178990_AT
tgctggctcgttgtatctattctgcctgcctgatgaactctactatcaggtgaatagcgg
tgcgatggtagatatcgtccttcaaacctatgatctgtcaattaccgacgtggccgcgtt
cacaataataccgtatgcttccgatggctctttgagagtcaaaaataccatttacctttt
ttccggtgtactcttaatttggcttcactactctatcattcttttttgcggtttaaaaat
gtgtttgaatatgaaacaccagttgaaaaagttttcaattgctaacgggaaacttcaacg
tcagtttttcaaagcattgatatttcagtgcatcggaccaactttatttttggttttacc
aatagcccctactctgctagtacctctcatttggccatacctaaaaatagaagtcagctg
gcaaaccggatggctatattctgtagttggcatgtatccaccatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGGCTCGTTGTATCTATTCTGC 246 583 444 Antisense
GCCTGCCTGATGAACTCTACTATCA 128 283 467 Antisense
GATATCGTCCTTCAAACCTATGATC 681 425 514 Antisense
GATCTGTCAATTACCGACGTGGCCG 220 419 535 Antisense
TGGCCGCGTTCACAATAATACCGTA 505 541 554 Antisense
TAATACCGTATGCTTCCGATGGCTC 353 635 569 Antisense
TAATTTGGCTTCACTACTCTATCAT 466 635 638 Antisense
ACTCTATCATTCTTTTTTGCGGTTT 676 99 653 Antisense
CCTCTCATTTGGCCATACCTAAAAA 617 265 826 Antisense
GAAGTCAGCTGGCAAACCGGATGGC 372 335 853 Antisense
GTAGTTGGCATGTATCCACCATTTG 379 457 886 Antisense
Sequence Source Affymetrix Proprietary Database