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[178989_at]

Description C09G1.3 /REP_DB=WormBase Gene ID /WP=CE02128 /TR=Q17864 /GB=CAA90540.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 3
(-3)
A 		3.3
(-3)
A 		6.3
(-2.5)
A 		39
(3)
A 		36
B 9.6
(3)
A 		5.6
(-3)
A 		6.1
(-2.3)
A 		6.8
(-1.2)
A 		4
C 6.2
(-2.8)
A 		12.8
(-2.4)
A 		2.8
(-3)
A 		96.9
(3)
A 		94
avr 6.3
(-2.8) 		7.2
(-2.7) 		5.1
(-3) 		47.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.5
(-2.7)
A 		4.4
(-2.7)
A 		22.4
(3)
A 		3.8
(-2.9)
A 		3.4
(-3)
A 		3.4
(-3)
A 		19
B 7
(-0.1)
A 		3.8
(-2.4)
A 		11.4
(3)
A 		3.1
(-2.9)
A 		4.6
(-1.9)
A 		3
(-3)
A 		8
C 2.6
(-3)
A 		3.8
(-2.7)
A 		25.2
(3)
A 		6
(-2.1)
A 		2.7
(-3)
A 		4.5
(-2.5)
A 		23
avr 4.7
(-2.6) 		4
(-2.9) 		19.7
(3) 		4.3
(-2.7) 		3.6
(-3) 		3.6
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.1
(-2.5)
A 		0.7
(-3)
A 		1.6
(-1.9)
A 		5.7
(3)
A 		5
B 3.1
(3)
A 		1.4
(-3)
A 		1.4
(-3)
A 		1.4
(-3)
A 		2
C 2.1
(-2.6)
A 		3.7
(-1.9)
A 		1
(-3)
A 		16.3
(3)
A 		15
avr 2.1
(-2.3) 		1.9
(-2.4) 		1.3
(-3) 		7.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.6
(-1.8)
A 		4.9
(3)
A 		1
(-2.7)
A 		1
(-2.7)
A 		0.8
(-3)
A 		4
B 2.4
(1.8)
A 		1.3
(-1.5)
A 		2.8
(3)
A 		0.8
(-3)
A 		1.9
(0.3)
A 		1.1
(-2.1)
A 		2
C 1
(-2.9)
A 		1.1
(-2.8)
A 		6.4
(3)
A 		1.2
(-2.7)
A 		0.9
(-3)
A 		1.5
(-2.3)
A 		6
avr 1.4
(-2.4) 		1.3
(-2.5) 		4.7
(3) 		1
(-3) 		1.3
(-2.5) 		1.1
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17897
Sequence Type Exemplar sequence
Representative Public ID C09G1.3 NCBI
Target Description C09G1.3 /REP_DB=WormBase Gene ID /WP=CE02128 /TR=Q17864 /GB=CAA90540.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078219 NCBI Caenorhabditis elegans C09G1.3 (C09G1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000010248 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15985825:15987398:1 9/11 None
C09G1.3 ENSEMBL cdna:known chromosome:CEL140:X:15986078:15987509:1 gene:C09G1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15986077-15987509(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09G1.3
Entrez Gene 182460 Entrez gene
SwissProt Q17864 EMBL-EBI
WormBase CE02128 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90540 Hypothetical protein C09G1.3 [Caenorhabditis elegans] ref|NP_510620.1| C09G1.3 [Caenorhabditis elegans] 1.0E-106
blast CAA90540 Hypothetical protein C09G1.3 [Caenorhabditis elegans] ref|NP_510620.1| C09G1.3 [Caenorhabditis elegans] 9.0E-81
Sequence
Target Sequence 
>C. ELEGANS:178989_AT
tgaaaacgattccactgttccgtcgaacaaaaagaaacaatgaagaacaaaaaactgagg
agcaccaagatgtacaggaaacgagaatcttgacttataatcaaaaaaatgctgaatctc
tccaacaggtgtccgatgaagttttcatgagctgcaaagttatagattgggctgaaagtt
cacgcgtcgctgactcactaaaaagaggagatctacaagtatgcaccccttctaacattt
tgcccagaaatgttgtctgtagtggtgccgaacttttccagtttgccgaaaaaattcgaa
ttcttgatgaatatttgaagagcaaagatttgactctacttcaagacgtttccaaacaaa
tcaaaagaggagaaaattccaattcaacattctctagatacacagttcccagttttgtgc
aaacatacgtttttcagtttatcgttgctttctcaatccgggagcttccagttaaagaac
aagctggaagtgtttcctctgttgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAACGATTCCACTGTTCCGTCG 517 573 14 Antisense
CTGAATCTCTCCAACAGGTGTCCGA 643 237 125 Antisense
TTGGGCTGAAAGTTCACGCGTCGCT 661 705 180 Antisense
CACGCGTCGCTGACTCACTAAAAAG 482 199 194 Antisense
GAGATCTACAAGTATGCACCCCTTC 235 397 221 Antisense
GTCTGTAGTGGTGCCGAACTTTTCC 709 461 268 Antisense
TGACTCTACTTCAAGACGTTTCCAA 316 571 344 Antisense
TCTAGATACACAGTTCCCAGTTTTG 171 615 406 Antisense
TTTCAGTTTATCGTTGCTTTCTCAA 379 671 445 Antisense
TTCTCAATCCGGGAGCTTCCAGTTA 2 689 463 Antisense
CTGGAAGTGTTTCCTCTGTTGCATC 582 241 497 Antisense
Sequence Source Affymetrix Proprietary Database