[Home] | [Total List]

[178988_at]

Description T08G5.1 /REP_DB=WormBase Gene ID /WP=CE18943 /TR=Q9XUQ7 /GB=CAB04717.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 15.3
(-2.2)
A 		62.1
(3)
A 		22.4
(-1.4)
A 		8.1
(-3)
A 		54
B 30.1
(2.4)
A 		4
(-3)
A 		5.5
(-2.7)
A 		33
(3)
A 		29
C 34.2
(-1.2)
A 		7.1
(-3)
A 		12.8
(-2.6)
A 		100
(3)
P 		93
avr 26.5
(-0.7) 		24.4
(-1.1) 		13.6
(-3) 		47
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 6.5
(-2.2)
A 		25.6
(1.2)
A 		36
(3)
A 		29.8
(1.9)
A 		2.2
(-3)
A 		27.4
(1.5)
A 		34
B 29.3
(-0)
A 		25.5
(-0.5)
A 		55
(3)
A 		6.7
(-2.7)
A 		14.1
(-1.8)
A 		4.2
(-3)
A 		51
C 8.6
(-2)
A 		23.7
(1)
A 		3.3
(-3)
A 		34.1
(3)
A 		4.3
(-2.8)
A 		20.8
(0.4)
A 		31
avr 14.8
(-1.1) 		24.9
(1.4) 		31.4
(3) 		23.5
(1.1) 		6.9
(-3) 		17.5
(-0.4) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.6
(-0.9)
A 		13.5
(3)
A 		5.9
(-0.7)
A 		1.2
(-3)
A 		12
B 9.6
(3)
A 		1
(-3)
A 		1.3
(-2.8)
A 		7
(1.2)
A 		9
C 11.3
(0.7)
A 		2
(-3)
A 		4.4
(-2)
A 		16.9
(3)
P 		15
avr 8.8
(3) 		5.5
(-1) 		3.9
(-3) 		8.4
(2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-2.6)
A 		9.1
(3)
A 		7.8
(2.1)
A 		7.6
(1.9)
A 		0.7
(-3)
A 		6.7
(1.3)
A 		8
B 10.2
(1.4)
A 		8.5
(0.5)
A 		13.4
(3)
A 		1.8
(-2.8)
A 		5.7
(-0.9)
A 		1.5
(-3)
A 		12
C 3.2
(-0.8)
A 		7.2
(3)
A 		0.8
(-3)
A 		6.9
(2.7)
A 		1.4
(-2.4)
A 		7
(2.8)
A 		6
avr 4.9
(-0.6) 		8.3
(3) 		7.3
(1.9) 		5.4
(-0.1) 		2.6
(-3) 		5.1
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13078
Sequence Type Exemplar sequence
Representative Public ID T08G5.1 NCBI
Target Description T08G5.1 /REP_DB=WormBase Gene ID /WP=CE18943 /TR=Q9XUQ7 /GB=CAB04717.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074082 NCBI Caenorhabditis elegans T08G5.1 (T08G5.1) mRNA, complete cds. 11/11 None
SNAP00000009106 ENSEMBL cdna:SNAP chromosome:CEL140:V:14021531:14022920:1 11/11 None
GENEFINDER00000009134 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14021788:14023710:1 11/11 None
T08G5.1 ENSEMBL cdna:known chromosome:CEL140:V:14021788:14023710:1 gene:T08G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14021787-14023710(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08G5.1
Entrez Gene 188303 Entrez gene
SwissProt Q9XUQ7 EMBL-EBI
WormBase CE18943 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04717 Hypothetical protein T08G5.1 [Caenorhabditis elegans] ref|NP_506483.1| T08G5.1 [Caenorhabditis elegans] 1.0E-132
blast CAB04717 Hypothetical protein T08G5.1 [Caenorhabditis elegans] ref|NP_506483.1| T08G5.1 [Caenorhabditis elegans] 1.0E-112
blast CAE61034 Hypothetical protein CBG04777 [Caenorhabditis briggsae] 4.0E-51
blast CAE61034 Hypothetical protein CBG04777 [Caenorhabditis briggsae] 4.0E-44
Sequence
Target Sequence 
>C. ELEGANS:178988_AT
gatgttattacagagcagccaagattatttgacaatcattctcgtgaacaagatgacgat
agaatgatgaattacgaagtgatgactattcgggaagttgaatcaccgattattctacct
ggtccaatttacacaacggaaacacataagaagaaaagaaaagtgaagaaacagccaaag
cgaatagttagaagaaaaatgagaaagcaaagaaatacttcaacttctcgaaatactcaa
aataacgaggatgttactgtattaagaaactttaatagtataaagcaccatcaaaaaccc
agaaacattgcatatcgtccaagacatcactccagaaaaattcgagtacatcaagaccca
cgttatccaacaattcctccacctactatcaactatggtcttaaattcaggaggtgccat
ccggatgataaaaatcgatttgtaaaagcagtgccaccgagtcatctgaaaggaaagtca
atatccgcaaaacaaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTATTACAGAGCAGCCAAGAT 672 409 205 Antisense
ATTTGACAATCATTCTCGTGAACAA 55 19 231 Antisense
GAATCACCGATTATTCTACCTGGTC 696 325 304 Antisense
CTACCTGGTCCAATTTACACAACGG 597 223 319 Antisense
AACCCAGAAACATTGCATATCGTCC 237 147 500 Antisense
CATATCGTCCAAGACATCACTCCAG 133 215 515 Antisense
AATTCGAGTACATCAAGACCCACGT 598 177 543 Antisense
CAAGACCCACGTTATCCAACAATTC 252 185 556 Antisense
ATTCAGGAGGTGCCATCCGGATGAT 681 5 609 Antisense
AGTGCCACCGAGTCATCTGAAAGGA 212 61 654 Antisense
AAGTCAATATCCGCAAAACAACCAT 269 155 679 Antisense
Sequence Source Affymetrix Proprietary Database