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[178987_at]

Description C32A9.1 /REP_DB=WormBase Gene ID /WP=CE02152 /TR=Q18349 /GB=CAA89022.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 25      6grp_total > 07      4grp_total > 28      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 106.2
(0)
P 		112.8
(0.3)
P 		38.5
(-3)
A 		173
(3)
P 		135
B 138
(2.5)
P 		82.9
(-1.9)
P 		69.3
(-3)
A 		143.6
(3)
P 		74
C 103.9
(-0.6)
P 		153.4
(1.9)
A 		58.1
(-3)
A 		174.3
(3)
P 		116
avr 116
(0.4) 		116.4
(0.4) 		55.3
(-3) 		163.6
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 118.9
(3)
P 		39.3
(-3)
A 		68
(-0.8)
A 		48.2
(-2.3)
A 		83.7
(0.3)
P 		63.1
(-1.2)
P 		80
B 111.2
(3)
P 		110.7
(2.9)
A 		80.9
(-0.1)
P 		78.2
(-0.4)
P 		52.4
(-3)
A 		84.3
(0.3)
P 		59
C 107.5
(2.8)
P 		110.2
(3)
P 		67.9
(-0.8)
A 		100.2
(2.1)
P 		42.9
(-3)
P 		73.4
(-0.3)
A 		67
avr 112.5
(3) 		86.7
(0.1) 		72.3
(-1.6) 		75.5
(-1.2) 		59.7
(-3) 		73.6
(-1.4) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 38.7
(3)
P 		24.5
(0)
P 		10.1
(-3)
A 		25.3
(0.2)
P 		29
B 44
(3)
P 		20.5
(-2)
P 		16
(-3)
A 		30.6
(0.1)
P 		28
C 34.4
(0.6)
P 		44.1
(3)
A 		20.2
(-3)
A 		29.4
(-0.7)
P 		24
avr 39
(3) 		29.7
(0.6) 		15.4
(-3) 		28.4
(0.3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 21.9
(1.4)
P 		14
(-2.2)
A 		14.8
(-1.8)
A 		12.2
(-3)
A 		25.3
(3)
P 		15.4
(-1.5)
P 		13
B 38.7
(3)
P 		36.8
(2.4)
A 		19.7
(-3)
P 		20.7
(-2.7)
P 		21.3
(-2.5)
A 		31.4
(0.7)
P 		19
C 39.9
(3)
P 		33.6
(1.5)
P 		17.3
(-2.2)
A 		20.1
(-1.6)
P 		13.9
(-3)
P 		24.6
(-0.5)
A 		26
avr 33.5
(3) 		28.1
(1) 		17.3
(-3) 		17.7
(-2.9) 		20.2
(-1.9) 		23.8
(-0.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16080
Sequence Type Exemplar sequence
Representative Public ID C32A9.1 NCBI
Target Description C32A9.1 /REP_DB=WormBase Gene ID /WP=CE02152 /TR=Q18349 /GB=CAA89022.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077321 NCBI Caenorhabditis elegans C32A9.1 (C32A9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030559 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10258661:10260063:-1 11/11 None
C32A9.1 ENSEMBL cdna:known chromosome:CEL140:X:10258661:10260063:-1 gene:C32A9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030558 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10258660-10260063(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32A9.1
Entrez Gene 183105 Entrez gene
SwissProt Q18349 EMBL-EBI
WormBase CE02152 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA89022 Hypothetical protein C32A9.1 [Caenorhabditis elegans] ref|NP_509722.1| C32A9.1 [Caenorhabditis elegans] 1.0E-173
blast CAE70552 Hypothetical protein CBG17197 [Caenorhabditis briggsae] 7.0E-90
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509722.1 1 7-29
C32A9.1 1 7-29
GENEFINDER00000030559 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:178987_AT
tatagtggccatcatcatttcctctttgatgcctctgaatcagtgaccatccatgtacaa
atcacaccgatttttagacttggttgcgcagagtgggcaaaaaatgtgtacagcctttcg
ggccacacaattattcttgagaacaatctcggaagcaaatactgtatggtacaaatgcct
gcctctctagaaattacgtggataaactatgaaacaacgaatcgaaaaaaaccgtgttgc
ccagatgttttcgtggcgtccacggattttgcggaaaatccagtgggctacagtgattca
ttcaacgcctgtgaaatgcgtgcgaatcaagagacatacattacacggtgcgagatgacg
tatatttacttcagacagtcagctaagcacgataaactcatttttcggatcaaaccaaga
cacaagaaacatattgatgaatgtataccagtgccagaagaactggagccaagcaacttc
acatgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAGTGGCCATCATCATTTCCTCT 642 659 358 Antisense
TTTCCTCTTTGATGCCTCTGAATCA 579 669 375 Antisense
CTGAATCAGTGACCATCCATGTACA 522 237 392 Antisense
AAATGTGTACAGCCTTTCGGGCCAC 188 121 459 Antisense
CTTTCGGGCCACACAATTATTCTTG 107 221 472 Antisense
TGTATGGTACAAATGCCTGCCTCTC 249 559 520 Antisense
GCCTGCCTCTCTAGAAATTACGTGG 272 283 534 Antisense
GTTGCCCAGATGTTTTCGTGGCGTC 620 439 593 Antisense
TCGTGGCGTCCACGGATTTTGCGGA 19 601 608 Antisense
GCTACAGTGATTCATTCAACGCCTG 216 301 644 Antisense
GGAGCCAAGCAACTTCACATGCATC 309 521 822 Antisense
Sequence Source Affymetrix Proprietary Database