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[178986_s_at]

Description F07D3.1 /REP_DB=WormBase Gene ID /WP=CE05566 /TR=Q19163 /GB=CAA94887.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 72      6grp_total > 10      4grp_total > 53      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 526
(2.2)
P 		546.5
(3)
P 		504.7
(1.4)
P 		393.2
(-3)
P 		153
B 686.3
(3)
P 		514.5
(-2.4)
P 		494.5
(-3)
P 		509.7
(-2.5)
P 		192
C 541
(1.8)
P 		563.2
(3)
P 		532.3
(1.4)
P 		448.6
(-3)
P 		115
avr 584.4
(3) 		541.4
(1.1) 		510.5
(-0.3) 		450.5
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 219.8
(-3)
P 		528.3
(3)
P 		331.6
(-0.8)
P 		367.6
(-0.1)
P 		416
(0.8)
P 		409.8
(0.7)
P 		309
B 417.6
(-1.8)
P 		497.6
(0.7)
P 		572.1
(3)
P 		459.5
(-0.5)
P 		452.6
(-0.7)
P 		380.2
(-3)
P 		192
C 469.5
(2.5)
P 		438.3
(1.4)
P 		482.5
(3)
P 		417.8
(0.7)
P 		389.9
(-0.3)
P 		312.4
(-3)
P 		170
avr 369
(-2.9) 		488.1
(3) 		462.1
(1.7) 		415
(-0.6) 		419.5
(-0.4) 		367.5
(-3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 191.5
(3)
P 		118.6
(-0.3)
P 		131.9
(0.3)
P 		57.6
(-3)
P 		134
B 218.8
(3)
P 		127.1
(-2)
P 		114.6
(-2.7)
P 		108.6
(-3)
P 		110
C 179.1
(2.7)
P 		161.9
(1.7)
P 		185.5
(3)
P 		75.6
(-3)
P 		110
avr 196.5
(3) 		135.9
(-0.1) 		144
(0.3) 		80.6
(-3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 40.5
(-3)
P 		187.9
(3)
P 		72.2
(-1.7)
P 		93.2
(-0.9)
P 		125.5
(0.5)
P 		99.8
(-0.6)
P 		147
B 145.3
(-0.7)
P 		165.6
(1.2)
P 		138.9
(-1.3)
P 		121.7
(-3)
P 		183.9
(3)
P 		141.8
(-1.1)
P 		62
C 174
(3)
P 		133.7
(0.3)
P 		122.8
(-0.4)
P 		84
(-3)
P 		126.2
(-0.2)
P 		104.6
(-1.6)
P 		90
avr 119.9
(-1.1) 		162.4
(3) 		111.3
(-1.9) 		99.6
(-3) 		145.2
(1.4) 		115.4
(-1.5) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178986_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11978
Sequence Type Exemplar sequence
Representative Public ID F07D3.1 NCBI
Target Description F07D3.1 /REP_DB=WormBase Gene ID /WP=CE05566 /TR=Q19163 /GB=CAA94887.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171508(11), NM_171933(11), NM_001028843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171508 NCBI Caenorhabditis elegans H24G06.1a (H24G06.1) mRNA, complete cds. 11/11 A 
NM_171933 NCBI Caenorhabditis elegans H24G06.1b (H24G06.1) mRNA, complete cds. 11/11 A 
NM_001028843 NCBI Caenorhabditis elegans H24G06.1d (H24G06.1) mRNA, complete cds. 11/11 None
SNAP00000004768 ENSEMBL cdna:SNAP chromosome:CEL140:V:9460354:9462898:1 11/11 None
GENEFINDER00000004771 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9459665:9462898:1 11/11 None
H24G06.1b ENSEMBL cdna:known chromosome:CEL140:V:9448757:9462898:1 gene:H24G06.1 11/11 A 
H24G06.1a ENSEMBL cdna:known chromosome:CEL140:V:9448757:9462898:1 gene:H24G06.1 11/11 A 
H24G06.1d.2 ENSEMBL cdna:known chromosome:CEL140:V:9451885:9462898:1 gene:H24G06.1 11/11 None
H24G06.1d.1 ENSEMBL cdna:known chromosome:CEL140:V:9456965:9462898:1 gene:H24G06.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179326 4 3 NM_001028843 174579_s_at (11), 178986_s_at (11), 185796_at (11)
NM_171508 174579_s_at (11), 178986_s_at (11), 185796_at (11)
NM_171933 174579_s_at (11), 178986_s_at (11), 185796_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9460499-9462898(+) 100.0 100.0
Public Domain and Genome References
Ensembl H24G06.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32229 Hypothetical protein H24G06.1a [Caenorhabditis elegans] ref|NP_741593.1| H24G06.1a [Caenorhabditis elegans] 0.0
blast AAL32230 Hypothetical protein H24G06.1b [Caenorhabditis elegans] ref|NP_741594.1| H24G06.1b [Caenorhabditis elegans] 0.0
blast T33777 hypothetical protein H24G06.1 - Caenorhabditis elegans 0.0
blast CAE72171 Hypothetical protein CBG19278 [Caenorhabditis briggsae] 0.0
blast AAV58863 Hypothetical protein H24G06.1d [Caenorhabditis elegans] ref|NP_001024014.1| H24G06.1d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.6E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.0E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.9E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0056
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0028
Sequence
Target Sequence 
>C. ELEGANS:178986_S_AT
gactgctggaaatcggtcaacaactggatcagatttctctccagcttcatcaagaggatc
ttcctcccttgcaatgggtagtggaccaatcggtagtggtcttccatcgagccgtcgtct
ttacgatcaacagagaagtgttctttcttcatctggtaccccaagaagaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGCTGGAAATCGGTCAACAACT 392 375 741 Antisense
GAAATCGGTCAACAACTGGATCAGA 208 363 749 Antisense
CTGGATCAGATTTCTCTCCAGCTTC 121 241 764 Antisense
CAGCTTCATCAAGAGGATCTTCCTC 691 203 782 Antisense
TCAAGAGGATCTTCCTCCCTTGCAA 602 631 790 Antisense
ATCTTCCTCCCTTGCAATGGGTAGT 483 31 798 Antisense
AATCGGTAGTGGTCTTCCATCGAGC 244 165 828 Antisense
ATCGAGCCGTCGTCTTTACGATCAA 62 35 846 Antisense
GCCGTCGTCTTTACGATCAACAGAG 648 283 851 Antisense
GAGAAGTGTTCTTTCTTCATCTGGT 155 391 873 Antisense
TTCATCTGGTACCCCAAGAAGAACT 696 679 888 Antisense
Sequence Source Affymetrix Proprietary Database