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[178985_at]

Description C04B4.1 /REP_DB=WormBase Gene ID /WP=CE05203 /TR=Q17619 /GB=CAA93526.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 43      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 34.3
(-1.8)
A 		68.6
(3)
M 		48.9
(0.3)
A 		25.3
(-3)
A 		43
B 64
(2.5)
A 		66.5
(3)
A 		35.1
(-3)
A 		39.7
(-2.1)
A 		31
C 42.1
(-1.8)
A 		88.2
(3)
A 		30.8
(-3)
A 		57.5
(-0.2)
A 		57
avr 46.8
(-1.6) 		74.4
(3) 		38.3
(-3) 		40.8
(-2.6) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 73.2
(3)
A 		44.8
(-0.5)
A 		27.4
(-2.6)
A 		39.6
(-1.1)
A 		32.5
(-2)
A 		24.1
(-3)
A 		49
B 44
(0.6)
A 		66.7
(3)
M 		8.9
(-3)
A 		64.9
(2.8)
A 		55.1
(1.8)
A 		31.6
(-0.6)
A 		58
C 24.2
(-1.8)
A 		86.2
(3)
A 		35.6
(-0.9)
A 		8.4
(-3)
A 		31.8
(-1.2)
A 		27.5
(-1.5)
A 		78
avr 47.1
(0.3) 		65.9
(3) 		24
(-3) 		37.6
(-1.1) 		39.8
(-0.7) 		27.7
(-2.5) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 12.5
(1.7)
A 		14.9
(3)
M 		12.8
(1.9)
A 		3.7
(-3)
A 		11
B 20.4
(3)
A 		16.4
(1)
A 		8.1
(-3)
A 		8.5
(-2.8)
A 		12
C 13.9
(-1.4)
A 		25.4
(3)
A 		10.7
(-2.6)
A 		9.7
(-3)
A 		16
avr 15.6
(1.3) 		18.9
(3) 		10.5
(-1.3) 		7.3
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 13.5
(1.6)
A 		15.9
(3)
A 		6
(-2.9)
A 		10.1
(-0.5)
A 		9.8
(-0.7)
A 		5.9
(-3)
A 		10
B 15.3
(0.9)
A 		22.2
(2.9)
M 		2.1
(-3)
A 		17.2
(1.5)
A 		22.4
(3)
A 		11.8
(-0.1)
A 		20
C 9
(-1.2)
A 		26.3
(3)
A 		9.1
(-1.2)
A 		1.7
(-3)
A 		10.3
(-0.9)
A 		9.2
(-1.2)
A 		25
avr 12.6
(-0.4) 		21.5
(3) 		5.7
(-3) 		9.7
(-1.5) 		14.2
(0.2) 		9
(-1.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178985_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16863
Sequence Type Exemplar sequence
Representative Public ID C04B4.1 NCBI
Target Description C04B4.1 /REP_DB=WormBase Gene ID /WP=CE05203 /TR=Q17619 /GB=CAA93526.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077646 NCBI Caenorhabditis elegans C04B4.1 (C04B4.1) mRNA, complete cds. 11/11 None
SNAP00000029832 ENSEMBL cdna:SNAP chromosome:CEL140:X:12280706:12282414:1 11/11 None
GENEFINDER00000029842 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12280706:12282911:1 11/11 None
C04B4.1 ENSEMBL cdna:known chromosome:CEL140:X:12280706:12282414:1 gene:C04B4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12280705-12282414(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04B4.1
Entrez Gene 182188 Entrez gene
SwissProt Q17619 EMBL-EBI
WormBase CE05203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93526 Hypothetical protein C04B4.1 [Caenorhabditis elegans] ref|NP_510047.1| C04B4.1 [Caenorhabditis elegans] 0.0
blast CAB05113 Hypothetical protein B0513.1 [Caenorhabditis elegans] ref|NP_502674.1| abnormal cell LINeage family member (lin-66) [Caenorhabditis elegans] 2.0E-50
blast CAE74652 Hypothetical protein CBG22449 [Caenorhabditis briggsae] 5.0E-50
blast CAB05113 Hypothetical protein B0513.1 [Caenorhabditis elegans] ref|NP_502674.1| abnormal cell LINeage family member (lin-66) [Caenorhabditis elegans] 3.0E-49
blast CAE74652 Hypothetical protein CBG22449 [Caenorhabditis briggsae] 9.0E-49
Sequence
Target Sequence 
>C. ELEGANS:178985_AT
atcttccaccattcaactactttggatattttgataatcagttcttcattgctccgccac
ttcaccaggctatctaccaaagttgcccaccaggattacaaaacgatcattctcagtacc
tctcttgttttcaacgcccgatgccgtcagtttcagagaaaacacaggaggaactccctc
taaaattaatgcttcctactttgccagttactccaaatcaacctttcaacagcattgatc
cactgcattgttcatcagcaaccggagaagggacaacgttgtacaacgctgcctgggaac
acgtagaaaaacacatgaacctttgttcattcgagcagaaaattcaggcgaatctaatca
aaaatgcttcaaactttaattctggaacaagccttttctctacgattaatgagtggaata
tactcggtaaaccagatgaattaaacaaatcgaaagctgatacaaacatttcctcgattt
acggcgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCCACCATTCAACTACTTTGG 193 31 929 Antisense
TGATAATCAGTTCTTCATTGCTCCG 436 565 960 Antisense
GGCTATCTACCAAAGTTGCCCACCA 433 537 996 Antisense
AAAACGATCATTCTCAGTACCTCTC 472 131 1028 Antisense
CCCGATGCCGTCAGTTTCAGAGAAA 136 261 1065 Antisense
TTAATGCTTCCTACTTTGCCAGTTA 395 683 1114 Antisense
GCCAGTTACTCCAAATCAACCTTTC 548 275 1131 Antisense
GCATTGATCCACTGCATTGTTCATC 658 307 1160 Antisense
GTACAACGCTGCCTGGGAACACGTA 30 461 1209 Antisense
TCTGGAACAAGCCTTTTCTCTACGA 66 607 1309 Antisense
ACATTTCCTCGATTTACGGCGTCAA 591 105 1394 Antisense
Sequence Source Affymetrix Proprietary Database