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[178984_at]

Description F26D2.1 /REP_DB=WormBase Gene ID /WP=CE15904 /TR=O17841 /GB=CAB04174.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 24      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 23
(-3)
A 		28.8
(-2.2)
A 		68.1
(3)
P 		56.1
(1.4)
A 		45
B 25.2
(0.5)
A 		3.5
(-3)
A 		40.8
(3)
A 		9.3
(-2.1)
A 		37
C 27.9
(-0.2)
A 		34.5
(0.7)
A 		6.5
(-3)
A 		52
(3)
P 		46
avr 25.4
(-1.9) 		22.3
(-3) 		38.5
(2.8) 		39.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 24.8
(1.3)
A 		27.1
(1.8)
A 		33
(3)
A 		24.7
(1.3)
A 		4
(-3)
A 		30.1
(2.4)
A 		29
B 15.8
(0.2)
A 		6.3
(-2.6)
A 		25.3
(3)
A 		5
(-3)
A 		15.6
(0.1)
A 		6.7
(-2.5)
A 		20
C 36.9
(3)
A 		37.1
(3)
A 		4
(-2.9)
A 		3.6
(-3)
A 		14.5
(-1)
A 		17.2
(-0.6)
A 		34
avr 25.8
(3) 		23.5
(2.1) 		20.8
(1) 		11.1
(-3) 		11.4
(-2.9) 		18
(-0.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.4
(-1.9)
A 		6.3
(-3)
A 		17.8
(3)
P 		8.2
(-2)
A 		12
B 8
(2)
A 		0.9
(-3)
A 		9.5
(3)
A 		2
(-2.2)
A 		9
C 9.2
(2.4)
A 		9.9
(3)
A 		2.3
(-3)
A 		8.8
(2.1)
P 		8
avr 8.5
(1) 		5.7
(-3) 		9.9
(3) 		6.3
(-2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.6
(-0.6)
A 		9.6
(3)
A 		7.2
(1.3)
A 		6.3
(0.6)
A 		1.2
(-3)
A 		7.3
(1.4)
A 		8
B 5.5
(1.9)
A 		2.1
(-2.1)
A 		6.2
(2.8)
A 		1.3
(-3)
A 		6.4
(3)
A 		2.5
(-1.6)
A 		5
C 13.7
(3)
A 		11.3
(1.9)
A 		1
(-2.9)
A 		0.7
(-3)
A 		4.7
(-1.2)
A 		5.8
(-0.6)
A 		13
avr 7.9
(3) 		7.7
(2.8) 		4.8
(-0.6) 		2.8
(-3) 		4.1
(-1.5) 		5.2
(-0.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14344
Sequence Type Exemplar sequence
Representative Public ID F26D2.1 NCBI
Target Description F26D2.1 /REP_DB=WormBase Gene ID /WP=CE15904 /TR=O17841 /GB=CAB04174.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074752 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-73) (str-73) mRNA, complete cds. 11/11 None
SNAP00000037740 ENSEMBL cdna:SNAP chromosome:CEL140:V:16433186:16434444:1 11/11 None
GENEFINDER00000037750 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16433186:16434444:1 11/11 None
F26D2.1 ENSEMBL cdna:known chromosome:CEL140:V:16432823:16434444:1 gene:F26D2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16432822-16434444(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-73
Ensembl F26D2.1
Entrez Gene 184960 Entrez gene
SwissProt O17841 EMBL-EBI
WormBase CE15904 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04174 Hypothetical protein F26D2.1 [Caenorhabditis elegans] ref|NP_507153.1| Seven TM Receptor family member (str-73) [Caenorhabditis elegans] 0.0
blast CAB04174 Hypothetical protein F26D2.1 [Caenorhabditis elegans] ref|NP_507153.1| Seven TM Receptor family member (str-73) [Caenorhabditis elegans] 1.0E-121
blast CAB03408 Hypothetical protein T23F1.3 [Caenorhabditis elegans] ref|NP_506846.1| T23F1.3 [Caenorhabditis elegans] 1.0E-116
blast CAB04174 Hypothetical protein F26D2.1 [Caenorhabditis elegans] ref|NP_507153.1| Seven TM Receptor family member (str-73) [Caenorhabditis elegans] 1.0E-116
blast CAB03407 Hypothetical protein T23F1.4 [Caenorhabditis elegans] ref|NP_506847.1| Seven TM Receptor family member (str-71) [Caenorhabditis elegans] 7.0E-93
blast CAB03408 Hypothetical protein T23F1.3 [Caenorhabditis elegans] ref|NP_506846.1| T23F1.3 [Caenorhabditis elegans] 1.0E-72
blast CAB03408 Hypothetical protein T23F1.3 [Caenorhabditis elegans] ref|NP_506846.1| T23F1.3 [Caenorhabditis elegans] 6.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507153.1 7 10-32,45-67,87-109,130-152,196-218,245-267,282-304
F26D2.1 7 10-32,45-67,87-109,130-152,196-218,245-267,282-304
SNAP00000037740 4 9-31,92-114,141-163,178-200
GENEFINDER00000037750 4 9-31,75-97,124-146,161-183
Sequence
Target Sequence 
>C. ELEGANS:178984_AT
gagcattgttcatcttttgttctccggatgaatattcaactgttactttgagagagatag
tcctcgaaacctacgatttaatgatcagcgacgttgtcaggtttccaataataccatatg
acgctgatggagcttggagattcaacaatgcatgtttccttcttacatgcgtactactaa
tttttggtcactactcgattattatattctgtggactcaaaatgcacttgaatatgacgc
agcaactcaaaaagttttcgaaaacaaacggcgaacttcaacgtcaatttttcaaggcac
tagttttccagtgcatcggaccaaccctattcttgattttaccaattgcacctatcctgc
tagcaaatatagcttaccgattttggaaactagaagtcaactggaaagccggatggatat
tctctataattgggttgtatcctccattcgatagtatttcattcataattattgtttccg
aatatcgaaatgtgataagagatcggtactgggatacgttttttggaagctcaaagagga
ataaaacacgtggaaactacaccaattcgccgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATTGTTCATCTTTTGTTCTCC 89 389 449 Antisense
GAGATAGTCCTCGAAACCTACGATT 60 369 502 Antisense
GATCAGCGACGTTGTCAGGTTTCCA 327 419 531 Antisense
TTCCTTCTTACATGCGTACTACTAA 539 699 604 Antisense
AATTTTTGGTCACTACTCGATTATT 328 175 627 Antisense
CAAACGGCGAACTTCAACGTCAATT 505 189 713 Antisense
ACTAGTTTTCCAGTGCATCGGACCA 252 99 747 Antisense
CAACCCTATTCTTGATTTTACCAAT 149 187 770 Antisense
TTACCAATTGCACCTATCCTGCTAG 649 681 787 Antisense
AATTGGGTTGTATCCTCCATTCGAT 229 169 876 Antisense
TGGAAACTACACCAATTCGCCGATT 323 547 999 Antisense
Sequence Source Affymetrix Proprietary Database