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[178983_at]

Description ZC482.3 /REP_DB=WormBase Gene ID /WP=CE16693 /TR=O18274 /GB=CAB07717.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 4.5
(-2.4)
A 		1.6
(-3)
A 		5.3
(-2.2)
A 		30.4
(3)
A 		29
B 2.9
(-1.8)
A 		4.2
(-0.4)
A 		1.8
(-3)
A 		7.4
(3)
A 		6
C 4.1
(-2)
A 		5.6
(3)
A 		3.8
(-3)
A 		4.6
(-0.3)
A 		2
avr 3.8
(-2.9) 		3.8
(-2.9) 		3.6
(-3) 		14.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.6
(0.6)
A 		1.7
(-2.7)
A 		3.4
(-0.7)
A 		1.4
(-3)
A 		6.7
(3)
A 		5.8
(2)
A 		5
B 41.7
(3)
A 		3.7
(-3)
A 		5.8
(-2.7)
A 		5
(-2.8)
A 		5.9
(-2.7)
A 		18.2
(-0.7)
A 		38
C 2.1
(-2.7)
A 		9.9
(-0.1)
A 		1.8
(-2.8)
A 		19.2
(3)
A 		2.9
(-2.4)
A 		1.2
(-3)
A 		18
avr 16.1
(3) 		5.1
(-2.3) 		3.7
(-3) 		8.5
(-0.7) 		5.2
(-2.3) 		8.4
(-0.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.6
(-1.1)
A 		0.3
(-3)
A 		1.4
(-1.4)
A 		4.5
(3)
A 		4
B 0.9
(-0.5)
A 		1
(-0)
A 		0.4
(-3)
A 		1.6
(3)
A 		1
C 1.4
(1.5)
A 		1.6
(3)
A 		1.3
(0.8)
A 		0.8
(-3)
A 		1
avr 1.3
(-1.6) 		1
(-3) 		1
(-3) 		2.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.9
(-0.9)
A 		0.6
(-1.9)
A 		0.7
(-1.6)
A 		0.3
(-3)
A 		2
(3)
A 		1.4
(0.9)
A 		2
B 14.5
(3)
A 		1.2
(-3)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		2.4
(-2.5)
A 		6.8
(-0.5)
A 		13
C 0.8
(-2.3)
A 		3
(1.5)
A 		0.5
(-2.8)
A 		3.9
(3)
A 		0.9
(-2.1)
A 		0.4
(-3)
A 		4
avr 5.4
(3) 		1.6
(-2.1) 		0.9
(-3) 		1.8
(-1.8) 		1.8
(-1.8) 		2.9
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6573
Sequence Type Exemplar sequence
Representative Public ID ZC482.3 NCBI
Target Description ZC482.3 /REP_DB=WormBase Gene ID /WP=CE16693 /TR=O18274 /GB=CAB07717.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067258 NCBI Caenorhabditis elegans ZC482.3 (ZC482.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004048 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12760985:12764214:-1 11/11 None
ZC482.3 ENSEMBL cdna:known chromosome:CEL140:III:12760985:12764214:-1 gene:ZC482.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004045 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12760980-12764210(-) 92.57 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC482.3
Entrez Gene 191185 Entrez gene
SwissProt O18274 EMBL-EBI
WormBase CE28862 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07717 Hypothetical protein ZC482.3 [Caenorhabditis elegans] ref|NP_499659.1| ZC482.3 [Caenorhabditis elegans] 0.0
blast CAC35854 Hypothetical protein ZC482.2 [Caenorhabditis elegans] emb|CAB07716.2| Hypothetical protein ZC482.2 [Caenorhabditis elegans] ref|NP_499656.1| ZC482.2 [Caenorhabditis elegans] 0.0
blast CAC35854 Hypothetical protein ZC482.2 [Caenorhabditis elegans] emb|CAB07716.2| Hypothetical protein ZC482.2 [Caenorhabditis elegans] ref|NP_499656.1| ZC482.2 [Caenorhabditis elegans] 1.0E-161
blast AAB65881 Hypothetical protein F59D6.6 [Caenorhabditis elegans] ref|NP_503829.1| F59D6.6 [Caenorhabditis elegans] 1.0E-100
blast AAB65881 Hypothetical protein F59D6.6 [Caenorhabditis elegans] ref|NP_503829.1| F59D6.6 [Caenorhabditis elegans] 5.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.9E-19
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 6.6E-14
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.9E-19
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 6.6E-14
Sequence
Target Sequence 
>C. ELEGANS:178983_AT
ggtactttctgttctatggcatttcaactattaacattcaagcgaaactttgcacaaatc
ctgggaagttagatgactatcaaaattgcatttttgagtcaatgagtaaattgcccgaga
tatgtctcgttatcattggagatttagtgataaacggggaaggtgatgaaaaatacttat
caaaattaaagtatacagaatatttatttgggactgtgactgtgaagaacacaaatctta
ctagtttggcttctctggataaaattaagtttattggtgcattgaatggtgatgtaacag
actttcccgttattcaaatatattcgaatccaaatttaagaaaagttggattgaatggag
ttgagaacgtaattacaaacggaaatcgaactgcaatcatacaagacaaccacccggatc
tgttcaaatccactaattgccaactatttggagcacattatagtacgcccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTACTTTCTGTTCTATGGCATTTC 310 505 1034 Antisense
TGGCATTTCAACTATTAACATTCAA 126 545 1050 Antisense
GCGAAACTTTGCACAAATCCTGGGA 300 287 1075 Antisense
TGAGTAAATTGCCCGAGATATGTCT 108 567 1136 Antisense
ATCTTACTAGTTTGGCTTCTCTGGA 662 31 1268 Antisense
TGGTGATGTAACAGACTTTCCCGTT 72 551 1320 Antisense
CAGACTTTCCCGTTATTCAAATATA 601 205 1331 Antisense
CAATCATACAAGACAACCACCCGGA 566 179 1427 Antisense
ACCCGGATCTGTTCAAATCCACTAA 676 89 1445 Antisense
TCAAATCCACTAATTGCCAACTATT 525 627 1457 Antisense
GGAGCACATTATAGTACGCCCAATT 523 519 1483 Antisense
Sequence Source Affymetrix Proprietary Database