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[178982_at]

Description T05D4.2 /REP_DB=WormBase Gene ID /WP=CE16342 /TR=O45748 /GB=CAB03292.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.5
(-1.1)
A 		4.5
(-2.3)
A 		13.4
(3)
A 		3.3
(-3)
A 		10
B 2
(-3)
A 		3.8
(-0.8)
A 		3
(-1.8)
A 		7
(3)
A 		5
C 6.3
(0.7)
A 		3
(-1.5)
A 		0.8
(-3)
A 		9.8
(3)
A 		9
avr 4.9
(-0.7) 		3.8
(-3) 		5.7
(0.9) 		6.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 4.8
(-3)
A 		9.7
(-2.8)
A 		15.3
(-2.5)
A 		6.4
(-2.9)
A 		16.6
(-2.4)
A 		130.1
(3)
A 		125
B 24
(-1.7)
A 		3.6
(-2.9)
A 		4.4
(-2.9)
A 		7
(-2.7)
A 		2.4
(-3)
A 		100.7
(3)
A 		98
C 12.6
(-2.5)
A 		3.5
(-3)
A 		3.5
(-3)
A 		6.5
(-2.8)
A 		2.7
(-3)
A 		113.7
(3)
A 		111
avr 13.8
(-2.5) 		5.6
(-3) 		7.7
(-2.9) 		6.6
(-2.9) 		7.2
(-2.9) 		114.8
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.4
(0.8)
A 		1
(-2)
A 		3.5
(3)
A 		0.5
(-3)
A 		3
B 0.6
(-3)
A 		0.9
(-1)
A 		0.7
(-2.3)
A 		1.5
(3)
A 		1
C 2.1
(3)
A 		0.9
(-1)
A 		0.3
(-3)
A 		1.6
(1.3)
A 		2
avr 1.7
(3) 		0.9
(-3) 		1.5
(1.5) 		1.2
(-0.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.4
(-2.5)
A 		3.3
(-2.5)
A 		1.6
(-2.9)
A 		5
(-2.2)
A 		31.7
(3)
A 		31
B 8.4
(-1.8)
A 		1.2
(-3)
A 		1.1
(-3)
A 		1.8
(-2.9)
A 		1
(-3)
A 		37.6
(3)
A 		37
C 4.7
(-2.4)
A 		1.1
(-3)
A 		0.9
(-3)
A 		1.3
(-2.9)
A 		0.9
(-3)
A 		38.1
(3)
A 		37
avr 4.7
(-2.5) 		1.9
(-2.9) 		1.8
(-3) 		1.6
(-3) 		2.3
(-2.9) 		35.8
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6883
Sequence Type Exemplar sequence
Representative Public ID T05D4.2 NCBI
Target Description T05D4.2 /REP_DB=WormBase Gene ID /WP=CE16342 /TR=O45748 /GB=CAB03292.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067402 NCBI Caenorhabditis elegans T05D4.2 (T05D4.2) mRNA, complete cds. 11/11 None
GENEFINDER00000043736 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13561413:13562552:-1 11/11 None
SNAP00000043730 ENSEMBL cdna:SNAP chromosome:CEL140:III:13561440:13562552:-1 11/11 None
T05D4.2 ENSEMBL cdna:known chromosome:CEL140:III:13561440:13562552:-1 gene:T05D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13561435-13562548(-) 99.58 100.0
Public Domain and Genome References
Gene Title
Ensembl T05D4.2
Entrez Gene 188126 Entrez gene
SwissProt O45748 EMBL-EBI
WormBase CE16342 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03292 Hypothetical protein T05D4.2 [Caenorhabditis elegans] ref|NP_499803.1| T05D4.2 [Caenorhabditis elegans] 0.0
blast CAE73704 Hypothetical protein CBG21217 [Caenorhabditis briggsae] 1.0E-17
blast CAB07367 Hypothetical protein F22G12.3 [Caenorhabditis elegans] ref|NP_493304.1| F22G12.3 [Caenorhabditis elegans] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178982_AT
tcatacgatcaacttctcactggacgcctttccccagcaaaaccgagaaatcatcgattg
gcttgccaaaattagaaaggacattccagacgttaacattttcgggagcaatgtggtaaa
tgaagatttgctctatttactccaaactgtcaatatcaccgatagcgtcgagttccactt
ggataccgctgaaatatttccttacgacatcccagtccgcgccaagtacttcttgagctc
tcaaacaaaatggattagcatcaagcaacttatgaagctggagtgcactgatatcatcgc
aaacgacactgatttcactgacgaggagctaagcacgttcattttgagttggatgaaaat
ggaaacaaatgagaatttgacttctttgatgactccgatcaagtcccctaaggcggttct
tagcaagttacctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATACGATCAACTTCTCACTGGAC 201 621 417 Antisense
TGCTCTATTTACTCCAAACTGTCAA 5 581 545 Antisense
ATCACCGATAGCGTCGAGTTCCACT 134 29 571 Antisense
GTCGAGTTCCACTTGGATACCGCTG 177 473 583 Antisense
AAATATTTCCTTACGACATCCCAGT 440 115 608 Antisense
CGCGCCAAGTACTTCTTGAGCTCTC 233 257 634 Antisense
AGCTGGAGTGCACTGATATCATCGC 495 81 692 Antisense
AACGACACTGATTTCACTGACGAGG 161 145 718 Antisense
GGAGCTAAGCACGTTCATTTTGAGT 335 519 741 Antisense
TTTGATGACTCCGATCAAGTCCCCT 510 665 801 Antisense
GGCGGTTCTTAGCAAGTTACCTCAT 601 473 828 Antisense
Sequence Source Affymetrix Proprietary Database