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[178981_s_at]

Description B0001.3 /REP_DB=WormBase Gene ID /WP=CE05141 /TR=Q17412 /GB=CAA93452.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 44      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 74      6grp_total > 64      4grp_total > 47      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 683
(3)
P 		534.8
(-0.6)
P 		450.7
(-2.7)
P 		437.6
(-3)
P 		245
B 724
(3)
P 		494.3
(-3)
P 		525.2
(-2.2)
P 		556
(-1.4)
P 		230
C 718.5
(3)
P 		459.1
(-2.5)
P 		506.2
(-1.5)
P 		437.9
(-3)
P 		281
avr 708.5
(3) 		496.1
(-2.5) 		494
(-2.6) 		477.2
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 648.5
(-2.3)
P 		702.9
(0.1)
P 		631.8
(-3)
P 		770.9
(3)
P 		644.4
(-2.5)
P 		694.8
(-0.3)
P 		139
B 625.7
(-3)
P 		739.8
(3)
P 		676.9
(-0.3)
P 		650.5
(-1.7)
P 		659
(-1.2)
P 		674
(-0.5)
P 		114
C 515.7
(-3)
P 		727.4
(1.7)
P 		786.7
(3)
P 		776.8
(2.8)
P 		606.1
(-1)
P 		758.4
(2.4)
P 		271
avr 596.6
(-3) 		723.4
(2.6) 		698.5
(1.5) 		732.7
(3) 		636.5
(-1.2) 		709.1
(2) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 248.7
(3)
P 		116.1
(-1.3)
P 		117.8
(-1.3)
P 		64.1
(-3)
P 		185
B 230.9
(3)
P 		122.1
(-2.8)
P 		121.7
(-2.8)
P 		118.5
(-3)
P 		112
C 237.8
(3)
P 		132
(-0.9)
P 		176.4
(0.8)
P 		73.8
(-3)
P 		164
avr 239.1
(3) 		123.4
(-1.5) 		138.6
(-0.9) 		85.5
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 119.5
(-3)
P 		250
(3)
P 		137.6
(-2.2)
P 		195.5
(0.5)
P 		194.4
(0.4)
P 		169.2
(-0.7)
P 		131
B 217.7
(0.1)
P 		246.2
(1.8)
P 		164.4
(-3)
P 		172.3
(-2.5)
P 		267.7
(3)
P 		251.3
(2)
P 		103
C 191.2
(-0.9)
P 		221.9
(1)
P 		200.2
(-0.3)
P 		156.2
(-3)
P 		196.1
(-0.5)
P 		253.9
(3)
P 		98
avr 176.1
(-2.3) 		239.4
(3) 		167.4
(-3) 		174.7
(-2.4) 		219.4
(1.3) 		224.8
(1.8) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178981_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9951
Sequence Type Exemplar sequence
Representative Public ID B0001.3 NCBI
Target Description B0001.3 /REP_DB=WormBase Gene ID /WP=CE05141 /TR=Q17412 /GB=CAA93452.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069906 NCBI Caenorhabditis elegans B0001.3 (B0001.3) mRNA, complete cds. 11/11 None
SNAP00000035712 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12143564:12145532:-1 11/11 None
GENEFINDER00000035720 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12138993:12150935:-1 11/11 None
B0001.3 ENSEMBL cdna:known chromosome:CEL140:IV:12143419:12145702:-1 gene:B0001.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12143569-12145813(-) 98.49 100.0
Public Domain and Genome References
Gene Title
Ensembl B0001.3
Entrez Gene 178163 Entrez gene
SwissProt Q17412 EMBL-EBI
WormBase CE29523 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93452 Hypothetical protein B0001.3 [Caenorhabditis elegans] ref|NP_502307.1| B0001.3 [Caenorhabditis elegans] 0.0
blast CAA93451 Hypothetical protein B0001.2 [Caenorhabditis elegans] ref|NP_502308.2| B0001.2 [Caenorhabditis elegans] 0.0
blast CAA93454 Hypothetical protein B0001.5 [Caenorhabditis elegans] ref|NP_502306.1| B0001.5 [Caenorhabditis elegans] 0.0
blast CAA93454 Hypothetical protein B0001.5 [Caenorhabditis elegans] ref|NP_502306.1| B0001.5 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 5.0E-70
Sequence
Target Sequence 
>C. ELEGANS:178981_S_AT
agacgatgaacttcgttctccgactccactctcaagagctcccactacagacgatgatag
tgatgccggctcacctgaagaaaaaactcacatggaaagaaaaagtccggatgatgttgc
tcctggaaacagaagaaataattcttctagtagtgctggtggtgacagtcacttgagagg
aaccgtagaattctcgtcgagcgatgacgacagtgacgacagtgacgacagcgacaatga
agcgagcaataattcaaacaaattatcaagttatagctggcccatgccgccaattttgca
acggccagcggtgtccggactttctacgccgtctcggaatggacggatggacgcaaatag
cacatacgcaacgccgctgtcacatataacttcacctgaacaaactcgaaatgaagctgg
gtctacaacgccacaaaaatcagaatcagaacgggagaatagaaaagataaactgaaact
actgcggatctccgagctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGATGAACTTCGTTCTCCGACT 591 69 1203 Antisense
GAGCTCCCACTACAGACGATGATAG 573 387 1238 Antisense
TGATAGTGATGCCGGCTCACCTGAA 342 565 1257 Antisense
AAGTCCGGATGATGTTGCTCCTGGA 321 151 1305 Antisense
GGAACCGTAGAATTCTCGTCGAGCG 61 529 1381 Antisense
GCCGCCAATTTTGCAACGGCCAGCG 551 283 1488 Antisense
CTTTCTACGCCGTCTCGGAATGGAC 429 211 1522 Antisense
GCAAATAGCACATACGCAACGCCGC 279 317 1555 Antisense
CCGCTGTCACATATAACTTCACCTG 336 263 1576 Antisense
TGAAGCTGGGTCTACAACGCCACAA 610 573 1614 Antisense
AACTACTGCGGATCTCCGAGCTGGT 124 141 1679 Antisense
Sequence Source Affymetrix Proprietary Database