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[178980_at]

Description C03A3.3 /REP_DB=WormBase Gene ID /WP=CE05194 /TR=Q17596 /GB=CAA97774.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 90
(-0.4)
P 		76.6
(-1.7)
A 		62.7
(-3)
P 		126.1
(3)
M 		63
B 85.7
(3)
A 		56.8
(-0.3)
A 		32.8
(-3)
A 		85.2
(2.9)
A 		53
C 69.2
(-2.4)
A 		60
(-2.9)
A 		57
(-3)
A 		179.9
(3)
P 		123
avr 81.6
(-0.7) 		64.5
(-2) 		50.8
(-3) 		130.4
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 72.3
(-0.1)
A 		60.1
(-1.7)
A 		96.1
(3)
P 		60.1
(-1.7)
A 		65
(-1.1)
A 		50.2
(-3)
A 		46
B 89.3
(3)
A 		78.3
(2)
A 		33.8
(-2)
A 		22.9
(-3)
A 		41.4
(-1.3)
A 		38.7
(-1.6)
A 		66
C 70.8
(3)
A 		60.6
(1)
A 		40.5
(-3)
A 		67.1
(2.3)
A 		45.3
(-2)
M 		55.2
(-0.1)
A 		30
avr 77.5
(3) 		66.3
(0.7) 		56.8
(-1.2) 		50
(-2.6) 		50.6
(-2.5) 		48
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 32.8
(3)
P 		16.6
(-2.9)
A 		16.4
(-3)
P 		18.5
(-2.2)
M 		16
B 27.3
(3)
A 		14
(-1.1)
A 		7.6
(-3)
A 		18.1
(0.2)
A 		20
C 22.9
(-0.4)
A 		17.3
(-3)
A 		19.9
(-1.8)
A 		30.3
(3)
P 		13
avr 27.7
(3) 		16
(-2.4) 		14.6
(-3) 		22.3
(0.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 13.3
(-2.3)
A 		21.4
(3)
A 		20.9
(2.7)
P 		15.2
(-1)
A 		19.6
(1.8)
A 		12.2
(-3)
A 		9
B 31.1
(3)
A 		26.1
(1.8)
A 		8.2
(-2.5)
A 		6.1
(-3)
A 		16.8
(-0.4)
A 		14.4
(-1)
A 		25
C 26.2
(3)
A 		18.5
(0.1)
A 		10.3
(-3)
A 		13.5
(-1.8)
A 		14.7
(-1.3)
M 		18.5
(0.1)
A 		16
avr 23.5
(3) 		22
(2.2) 		13.1
(-2.2) 		11.6
(-3) 		17
(-0.3) 		15
(-1.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17074
Sequence Type Exemplar sequence
Representative Public ID C03A3.3 NCBI
Target Description C03A3.3 /REP_DB=WormBase Gene ID /WP=CE05194 /TR=Q17596 /GB=CAA97774.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077479 NCBI Caenorhabditis elegans C03A3.3 (C03A3.3) mRNA, complete cds. 11/11 None
SNAP00000041006 ENSEMBL cdna:SNAP chromosome:CEL140:X:11267314:11268946:-1 11/11 None
GENEFINDER00000041008 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11267314:11268946:-1 11/11 None
C03A3.3 ENSEMBL cdna:known chromosome:CEL140:X:11267314:11268946:-1 gene:C03A3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11267313-11268946(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03A3.3
Entrez Gene 182131 Entrez gene
SwissProt Q17596 EMBL-EBI
WormBase CE05194 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97774 Hypothetical protein C03A3.3 [Caenorhabditis elegans] ref|NP_509880.1| C03A3.3 [Caenorhabditis elegans] 1.0E-173
blast CAA97774 Hypothetical protein C03A3.3 [Caenorhabditis elegans] ref|NP_509880.1| C03A3.3 [Caenorhabditis elegans] 1.0E-169
blast CAE70674 Hypothetical protein CBG17385 [Caenorhabditis briggsae] 1.0E-156
blast CAE70674 Hypothetical protein CBG17385 [Caenorhabditis briggsae] 1.0E-154
blast YP_035951 possible Zn-dependent hydrolase, beta-lactamase superfamily [Bacillus thuringiensis serovar konkukian str. 97-27] gb|AAT59565.1| possible Zn-dependent hydrolase, beta-lactamase superfamily [Bacillus thuringiensis serovar konkukian str. 97-27] 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 1.3E-15
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 3.4E-16
Sequence
Target Sequence 
>C. ELEGANS:178980_AT
ggtggaagatttgtgtgccgggcgcaagaataaatattatacccggttgatggatagtag
ctggcattgggaaatcgaaacgtacaaagtgacccggtggctaaatgatggagacaaaat
tatattgggagatgaatcacatttgatgaatattgttcaggtcatgtggactcctggaca
tactcccgacagtattgtactttggtatccgtacgctaatcgtctatttgtcggtgacct
cttttaccgttttgatgatataatgttcacctaccaatatacagacattcgacagtacga
aaattcagtcagaagtattttgaagtttgtgaaaagtcaagatgttgaggtacgatattc
tgcatcaaaaaacgacaccgataataactgcctcccaacgttcaagctttatcataggtt
cttattggctgttattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGGAAGATTTGTGTGCCGGGCGC 442 497 300 Antisense
TCGAAACGTACAAAGTGACCCGGTG 607 541 374 Antisense
GACCCGGTGGCTAAATGATGGAGAC 118 381 390 Antisense
GGTCATGTGGACTCCTGGACATACT 505 501 459 Antisense
GGACATACTCCCGACAGTATTGTAC 35 527 475 Antisense
GGTATCCGTACGCTAATCGTCTATT 575 503 503 Antisense
ATCGTCTATTTGTCGGTGACCTCTT 571 35 518 Antisense
GTTCACCTACCAATATACAGACATT 326 445 564 Antisense
AACGACACCGATAATAACTGCCTCC 449 143 670 Antisense
CTCCCAACGTTCAAGCTTTATCATA 28 235 691 Antisense
ATAGGTTCTTATTGGCTGTTATTGC 164 21 713 Antisense
Sequence Source Affymetrix Proprietary Database