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[178979_at]

Description K01C8.2 /REP_DB=WormBase Gene ID /WP=CE02263 /TR=Q21081 /GB=CAA88855.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 71.4
(-3)
A 		138
(3)
M 		88.1
(-1.5)
A 		124.1
(1.7)
A 		67
B 64.5
(-2.5)
A 		168.5
(3)
P 		127.7
(0.8)
A 		54.7
(-3)
A 		114
C 97.7
(-3)
A 		139.8
(1.6)
A 		153.2
(3)
A 		117
(-0.9)
P 		56
avr 77.9
(-3) 		148.8
(3) 		123
(0.8) 		98.6
(-1.2) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 58.9
(-2.5)
A 		117.5
(2.7)
P 		120.7
(3)
M 		117.9
(2.8)
P 		104.1
(1.5)
A 		53.5
(-3)
A 		67
B 100.2
(0)
A 		134.5
(3)
P 		116.6
(1.5)
A 		131.8
(2.8)
A 		125.4
(2.2)
A 		65
(-3)
A 		70
C 80.6
(-2.4)
A 		165.4
(3)
P 		96.2
(-1.4)
A 		114.2
(-0.3)
A 		113.4
(-0.3)
A 		71.9
(-3)
A 		94
avr 79.9
(-1.7) 		139.1
(3) 		111.2
(0.8) 		121.3
(1.6) 		114.3
(1) 		63.5
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 26
(1)
A 		30
(3)
M 		23
(-0.6)
A 		18.2
(-3)
A 		12
B 20.6
(-1.2)
A 		41.6
(3)
P 		29.6
(0.6)
A 		11.7
(-3)
A 		30
C 32.3
(-0.8)
A 		40.2
(0.6)
A 		53.4
(3)
A 		19.7
(-3)
P 		34
avr 26.3
(-0.2) 		37.3
(3) 		35.3
(2.4) 		16.5
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 10.9
(-3)
A 		41.8
(3)
P 		26.3
(-0)
M 		29.9
(0.7)
P 		31.4
(1)
A 		13
(-2.6)
A 		31
B 34.8
(-0.6)
A 		44.8
(1.6)
P 		28.3
(-2.1)
A 		34.9
(-0.6)
A 		50.9
(3)
A 		24.2
(-3)
A 		27
C 29.9
(-1.5)
A 		50.5
(3)
P 		24.5
(-2.7)
A 		23
(-3)
A 		36.7
(-0)
A 		24.1
(-2.8)
A 		28
avr 25.2
(-1.9) 		45.7
(3) 		26.4
(-1.6) 		29.3
(-0.9) 		39.7
(1.6) 		20.4
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3834
Sequence Type Exemplar sequence
Representative Public ID K01C8.2 NCBI
Target Description K01C8.2 /REP_DB=WormBase Gene ID /WP=CE02263 /TR=Q21081 /GB=CAA88855.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063341 NCBI Caenorhabditis elegans K01C8.2 (K01C8.2) mRNA, complete cds. 11/11 None
SNAP00000019055 ENSEMBL cdna:SNAP chromosome:CEL140:II:8267225:8269364:-1 10/11 None
GENEFINDER00000019066 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8267225:8269364:-1 11/11 None
K01C8.2 ENSEMBL cdna:known chromosome:CEL140:II:8267176:8269364:-1 gene:K01C8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8267221-8269361(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01C8.2
Entrez Gene 186839 Entrez gene
SwissProt Q21081 EMBL-EBI
WormBase CE02263 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88855 Hypothetical protein K01C8.2 [Caenorhabditis elegans] ref|NP_495742.1| K01C8.2 [Caenorhabditis elegans] 0.0
blast CAE57673 Hypothetical protein CBG00667 [Caenorhabditis briggsae] 1.0E-170
blast CAA88855 Hypothetical protein K01C8.2 [Caenorhabditis elegans] ref|NP_495742.1| K01C8.2 [Caenorhabditis elegans] 1.0E-114
blast CAE57673 Hypothetical protein CBG00667 [Caenorhabditis briggsae] 1.0E-105
blast CAE69239 Hypothetical protein CBG15282 [Caenorhabditis briggsae] 3.0E-17
blast CAE68295 Hypothetical protein CBG13983 [Caenorhabditis briggsae] 9.0E-14
Sequence
Target Sequence 
>C. ELEGANS:178979_AT
agctctcgagatgtgcacaacacccggaacacaatgctcatcggccgggtacacgtgcca
gctatcagtacttctagcaacatatgtttgctgtggacaagggtcaactggatcaacgat
cggatgcgctgatgggcgaccggtttatcaacagattgctggtcaaacttatacttgtga
aatcacgagtgctatcacaagttgcccatccggttatgattgtgcaccatctgatgatcc
gttcgtagatgtgtgttgtttaacgggttcgaccccgattccggaaaacctttcatgtcc
gactggttggaattcttacaaaaatgaagtggataacgcagttcgtacttgcacagctgt
acttgacacatcatgtccaattggatattcatgtgcaccgtcaaatcaagtatcccaatt
tttatgttgtcgccttgcttcttctttaatttgtatcaacgggaagacattacttgtcaa
tggtgctccgaaactatgtacaccaactacttatagtcagtgtccctataattattcgtg
ccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCTCGAGATGTGCACAACACCC 74 81 594 Antisense
TACACGTGCCAGCTATCAGTACTTC 181 643 643 Antisense
GATCGGATGCGCTGATGGGCGACCG 394 417 711 Antisense
CGAGTGCTATCACAAGTTGCCCATC 537 249 779 Antisense
GTTGCCCATCCGGTTATGATTGTGC 41 441 794 Antisense
GTGCACCATCTGATGATCCGTTCGT 105 479 815 Antisense
GGAAAACCTTTCATGTCCGACTGGT 27 527 876 Antisense
TAACGCAGTTCGTACTTGCACAGCT 391 639 927 Antisense
GTGCACCGTCAAATCAAGTATCCCA 227 477 986 Antisense
GCCTTGCTTCTTCTTTAATTTGTAT 291 281 1025 Antisense
GTGTCCCTATAATTATTCGTGCCAG 445 485 1113 Antisense
Sequence Source Affymetrix Proprietary Database