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[178978_s_at]

Description F14B6.6 /REP_DB=WormBase Gene ID /WP=CE25856 /TR=O62165 /GB=CAB04109.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 65      4grp_high_8_8 > 15      6grp_total > 55      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 75.8
(-3)
P 		81.4
(-2.9)
P 		103.5
(-2.4)
P 		337.8
(3)
P 		262
B 77.9
(-3)
P 		106
(-2.3)
M 		131.4
(-1.6)
P 		314.4
(3)
P 		237
C 103.3
(-2.5)
P 		86.7
(-3)
P 		122.7
(-2)
P 		294.6
(3)
P 		208
avr 85.7
(-3) 		91.4
(-2.9) 		119.2
(-2.1) 		315.6
(3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 80.9
(-1)
A 		84.7
(-0.6)
P 		109.3
(1.9)
P 		76.3
(-1.5)
P 		61.5
(-3)
P 		119.8
(3)
P 		58
B 67.9
(-0.2)
P 		81
(1.6)
P 		57.6
(-1.6)
P 		84.9
(2.2)
P 		47.5
(-3)
P 		90.9
(3)
P 		43
C 61.2
(-0.7)
M 		84.2
(0.8)
P 		107.3
(2.4)
P 		87.5
(1.1)
P 		27.6
(-3)
A 		116.2
(3)
P 		89
avr 70
(-0.7) 		83.3
(0.6) 		91.4
(1.3) 		82.9
(0.5) 		45.5
(-3) 		109
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 27.6
(-1.1)
P 		17.7
(-3)
P 		27.1
(-1.2)
P 		49.4
(3)
P 		32
B 24.8
(-3)
P 		26.2
(-2.8)
M 		30.5
(-2.2)
P 		67
(3)
P 		42
C 34.2
(-0.8)
P 		24.9
(-3)
P 		42.8
(1.3)
P 		49.7
(3)
P 		25
avr 28.9
(-1.9) 		22.9
(-3) 		33.5
(-1) 		55.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 14.9
(-3)
A 		30.1
(3)
P 		23.8
(0.5)
P 		19.3
(-1.3)
P 		18.5
(-1.6)
P 		29.2
(2.6)
P 		15
B 23.6
(-0.1)
P 		26.9
(0.9)
P 		14
(-3)
P 		22.5
(-0.4)
P 		19.3
(-1.4)
P 		33.9
(3)
P 		20
C 22.7
(-0.2)
M 		25.7
(0.4)
P 		27.3
(0.7)
P 		17.6
(-1.3)
P 		8.9
(-3)
A 		38.9
(3)
P 		30
avr 20.4
(-1.4) 		27.6
(0.9) 		21.7
(-1) 		19.8
(-1.6) 		15.6
(-3) 		34
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178978_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1431
Sequence Type Exemplar sequence
Representative Public ID F14B6.6 NCBI
Target Description F14B6.6 /REP_DB=WormBase Gene ID /WP=CE25856 /TR=O62165 /GB=CAB04109.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025937(11), NR_002342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025937 NCBI Caenorhabditis elegans F14B6.6a (F14B6.6) mRNA, complete cds. 11/11 None
NR_002342 NCBI Caenorhabditis elegans F14B6.6, miscRNA. 11/11 None
GENEFINDER00000017566 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12240834:12243216:1 11/11 None
SNAP00000017560 ENSEMBL cdna:SNAP chromosome:CEL140:I:12242191:12246167:1 11/11 None
F14B6.6 ENSEMBL cdna:known chromosome:CEL140:I:12240811:12243216:1 gene:F14B6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12240764-12243147(+) 100.0 100.0
Public Domain and Genome References
Ensembl F14B6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04109 Hypothetical protein F14B6.6a [Caenorhabditis elegans] ref|NP_001021108.1| F14B6.6a [Caenorhabditis elegans] 0.0
blast CAB04107 Hypothetical protein F14B6.4 [Caenorhabditis elegans] ref|NP_493088.2| F14B6.4 [Caenorhabditis elegans] 1.0E-149
blast CAA15838 Hypothetical protein C47F8.5 [Caenorhabditis elegans] ref|NP_493116.2| C47F8.5 [Caenorhabditis elegans] 9.0E-84
blast CAB05807 Hypothetical protein T09F5.1 [Caenorhabditis elegans] ref|NP_506737.1| T09F5.1 [Caenorhabditis elegans] 5.0E-83
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 5.0E-82
blast CAB03537 Hypothetical protein T09E11.10 [Caenorhabditis elegans] ref|NP_493124.1| T09E11.10 [Caenorhabditis elegans] 3.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 6.5E-105
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 1.0E-38
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.6E-113
Sequence
Target Sequence 
>C. ELEGANS:178978_S_AT
aattctctgatttcgtttggatgcacgaggtacgctttctatcttgctggtccattctac
ttggtgacaagaagtgctgctttacgattactagaagcttcaaaacatagaaattttcac
aagatcgaagataccctcatcactggagttctggctgatgatactgatgtgagcagagta
cagcttcaccggataaatttgggccaagagaagggaactgatttggtttttgcatggcat
agcccgctaaatgatccggagtacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTCTGATTTCGTTTGGATGCA 248 177 709 Antisense
CGTTTGGATGCACGAGGTACGCTTT 380 243 722 Antisense
GAAGTGCTGCTTTACGATTACTAGA 661 335 779 Antisense
CTTTACGATTACTAGAAGCTTCAAA 309 221 788 Antisense
TCATCACTGGAGTTCTGGCTGATGA 203 619 845 Antisense
TGAGCAGAGTACAGCTTCACCGGAT 557 569 878 Antisense
GCTTCACCGGATAAATTTGGGCCAA 442 305 891 Antisense
GAAGGGAACTGATTTGGTTTTTGCA 427 333 918 Antisense
GGTTTTTGCATGGCATAGCCCGCTA 29 507 933 Antisense
GGCATAGCCCGCTAAATGATCCGGA 535 537 944 Antisense
GCCCGCTAAATGATCCGGAGTACAA 387 285 950 Antisense
Sequence Source Affymetrix Proprietary Database