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[178977_at]

Description F14B6.6 /REP_DB=WormBase Gene ID /WP=CE25856 /TR=O62165 /GB=CAB04109.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 55      4grp_high_8_8 > 05      6grp_total > 55      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 167.9
(0.6)
P 		132.1
(-1.3)
P 		100.1
(-3)
M 		214.6
(3)
P 		115
B 156.9
(-0.3)
P 		147.3
(-1.1)
P 		126.7
(-3)
P 		192.6
(3)
P 		66
C 131.4
(-3)
P 		151.5
(-2.2)
P 		156.1
(-2.1)
P 		289.2
(3)
P 		158
avr 152.1
(-1.6) 		143.6
(-2.1) 		127.6
(-3) 		232.1
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 122
(-0.4)
P 		100.3
(-3)
P 		149.8
(3)
P 		104.6
(-2.5)
P 		109.4
(-1.9)
P 		134.8
(1.2)
P 		50
B 147
(1.7)
P 		131
(0.6)
P 		165.5
(3)
P 		122.4
(0.1)
P 		77.8
(-3)
M 		118.8
(-0.2)
P 		88
C 84.6
(-1.8)
P 		121.1
(1.6)
P 		72.2
(-3)
P 		135.7
(3)
P 		73.5
(-2.9)
P 		105.3
(0.1)
P 		64
avr 117.9
(1.4) 		117.5
(1.3) 		129.2
(3) 		120.9
(1.8) 		86.9
(-3) 		119.6
(1.6) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 61.1
(3)
P 		28.7
(-2.6)
P 		26.2
(-3)
M 		31.4
(-2.1)
P 		35
B 50
(3)
P 		36.4
(-1)
P 		29.4
(-3)
P 		41
(0.4)
P 		21
C 43.5
(-3)
P 		43.6
(-2.9)
P 		54.4
(3)
P 		48.8
(-0.1)
P 		11
avr 51.5
(3) 		36.2
(-3) 		36.7
(-2.8) 		40.4
(-1.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 22.5
(-3)
P 		35.7
(3)
P 		32.6
(1.6)
P 		26.5
(-1.2)
P 		33
(1.8)
P 		32.8
(1.7)
P 		13
B 51.2
(3)
P 		43.6
(0.7)
P 		40.2
(-0.4)
P 		32.4
(-2.8)
P 		31.6
(-3)
M 		44.3
(0.9)
P 		20
C 31.4
(1.2)
P 		37
(3)
P 		18.4
(-3)
P 		27.3
(-0.1)
P 		23.8
(-1.3)
P 		35.3
(2.5)
P 		19
avr 35
(0.7) 		38.8
(3) 		30.4
(-2) 		28.7
(-3) 		29.5
(-2.5) 		37.5
(2.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178977_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1431
Sequence Type Exemplar sequence
Representative Public ID F14B6.6 NCBI
Target Description F14B6.6 /REP_DB=WormBase Gene ID /WP=CE25856 /TR=O62165 /GB=CAB04109.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025937(11), NR_002342(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025937 NCBI Caenorhabditis elegans F14B6.6a (F14B6.6) mRNA, complete cds. 11/11 None
NR_002342 NCBI Caenorhabditis elegans F14B6.6, miscRNA. 9/11 None
GENEFINDER00000017566 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12240834:12243216:1 11/11 None
F14B6.6 ENSEMBL cdna:known chromosome:CEL140:I:12240811:12243216:1 gene:F14B6.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017560 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12240764-12243147(+) 100.0 100.0
Public Domain and Genome References
Ensembl F14B6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04109 Hypothetical protein F14B6.6a [Caenorhabditis elegans] ref|NP_001021108.1| F14B6.6a [Caenorhabditis elegans] 0.0
blast CAB05807 Hypothetical protein T09F5.1 [Caenorhabditis elegans] ref|NP_506737.1| T09F5.1 [Caenorhabditis elegans] 5.0E-83
blast CAB03537 Hypothetical protein T09E11.10 [Caenorhabditis elegans] ref|NP_493124.1| T09E11.10 [Caenorhabditis elegans] 3.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 6.5E-105
Sequence
Target Sequence 
>C. ELEGANS:178977_AT
agatcggtattccaaattatcgtttaaaaccctgacgctgcttctcttcggggtctccaa
agtcccgtcagcccagctaattggaaaaattgacggagatgttctcttctttccgaattt
attcttatcgactataaaaaacgaaaattctatgattaacgtgacaagtgcaagtgttta
tggaaaaattgccgaagctggagtgccgattgtgtccaactgctgcaaacgatttttaaa
gtacaatttcagacgaaattctctgatttcgtttggatgcacgaggtacgctttctatct
tgctggtccattctacttggtgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCGGTATTCCAAATTATCGTTT 380 67 453 Antisense
TCGTTTAAAACCCTGACGCTGCTTC 128 603 472 Antisense
TCTCTTCGGGGTCTCCAAAGTCCCG 426 567 495 Antisense
TCCCGTCAGCCCAGCTAATTGGAAA 689 595 515 Antisense
GACGGAGATGTTCTCTTCTTTCCGA 276 377 544 Antisense
GTTCTCTTCTTTCCGAATTTATTCT 214 443 553 Antisense
GCCGAAGCTGGAGTGCCGATTGTGT 314 285 643 Antisense
GTCCAACTGCTGCAAACGATTTTTA 488 477 666 Antisense
CACGAGGTACGCTTTCTATCTTGCT 622 199 732 Antisense
CTATCTTGCTGGTCCATTCTACTTG 448 223 747 Antisense
GCTGGTCCATTCTACTTGGTGACAA 400 295 754 Antisense
Sequence Source Affymetrix Proprietary Database