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[178974_at]

Description ZC504.1 /REP_DB=WormBase Gene ID /WP=CE02381 /TR=Q23354 /GB=CAA90340.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 51      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 155.9
(1)
A 		196.9
(3)
A 		192.8
(2.8)
A 		74.1
(-3)
A 		123
B 162.3
(0.3)
A 		194.9
(3)
A 		164
(0.5)
A 		121.9
(-3)
A 		73
C 137.7
(-2.5)
A 		213.6
(3)
A 		142
(-2.2)
A 		131.5
(-3)
A 		82
avr 152
(-0.2) 		201.8
(3) 		166.3
(0.7) 		109.2
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 194
(3)
A 		73.7
(-1.8)
A 		166.7
(1.9)
A 		44.4
(-3)
A 		121.1
(0.1)
A 		109.9
(-0.4)
A 		150
B 85.9
(-1.4)
A 		174.3
(3)
A 		103.5
(-0.5)
A 		136.3
(1.1)
A 		74.7
(-1.9)
A 		52.7
(-3)
A 		122
C 68.3
(-3)
A 		157.1
(3)
A 		148.5
(2.4)
A 		146.8
(2.3)
A 		122.4
(0.7)
A 		97.3
(-1)
A 		89
avr 116.1
(0.3) 		135
(2.5) 		139.6
(3) 		109.2
(-0.4) 		106.1
(-0.8) 		86.6
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 56.8
(3)
A 		42.7
(1.2)
A 		50.4
(2.2)
A 		10.9
(-3)
A 		46
B 51.7
(3)
A 		48.1
(2.2)
A 		38
(-0.2)
A 		26
(-3)
A 		26
C 45.6
(0.6)
A 		61.4
(3)
A 		49.5
(1.2)
A 		22.2
(-3)
A 		39
avr 51.4
(3) 		50.7
(2.9) 		46
(2) 		19.7
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 35.8
(2.8)
A 		26.2
(0.6)
A 		36.3
(3)
A 		11.2
(-3)
A 		36.5
(3)
A 		26.8
(0.7)
A 		25
B 29.9
(-1.4)
A 		58
(3)
A 		25.1
(-2.1)
A 		36.1
(-0.4)
A 		30.3
(-1.3)
A 		19.6
(-3)
A 		38
C 25.3
(-3)
A 		47.9
(3)
A 		37.8
(0.3)
A 		29.5
(-1.9)
A 		39.6
(0.8)
A 		32.6
(-1.1)
A 		23
avr 30.3
(-1.5) 		44
(3) 		33.1
(-0.6) 		25.6
(-3) 		35.5
(0.2) 		26.3
(-2.8) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16634
Sequence Type Exemplar sequence
Representative Public ID ZC504.1 NCBI
Target Description ZC504.1 /REP_DB=WormBase Gene ID /WP=CE02381 /TR=Q23354 /GB=CAA90340.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077343 NCBI Caenorhabditis elegans ZC504.1 (ZC504.1) mRNA, complete cds. 11/11 None
GENEFINDER00000031667 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10407411:10409702:1 11/11 None
SNAP00000031663 ENSEMBL cdna:SNAP chromosome:CEL140:X:10408035:10409702:1 11/11 None
ZC504.1 ENSEMBL cdna:known chromosome:CEL140:X:10407411:10409702:1 gene:ZC504.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10407410-10409702(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC504.1
Entrez Gene 191192 Entrez gene
SwissProt Q23354 EMBL-EBI
WormBase CE34136 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90340 Hypothetical protein ZC504.1 [Caenorhabditis elegans] ref|NP_509744.2| ZC504.1 [Caenorhabditis elegans] 0.0
blast CAE70576 Hypothetical protein CBG17232 [Caenorhabditis briggsae] 0.0
blast NP_497206 F30H5.3 [Caenorhabditis elegans] gb|AAA68408.1| Hypothetical protein F30H5.3 [Caenorhabditis elegans] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.1E-4
Sequence
Target Sequence 
>C. ELEGANS:178974_AT
ccaaaaatcaattaccgtcctccatctcgatctaccgtaagcccggaggattcccctatt
tccggtgatcatcactttctcatccacaatgaaggaataattggcccatcaataaagact
cgtacgtcacacgatgtgttttactcgttgcaacctttgtcaaagtttccaagtgcaggt
catcaaaaacctagcaagacatttcaaaaagtgacaaagtcaacttccacatatggtgtt
gtctcaaattacaaaccagcgttgtgcccaccaagagcaacgtcggtattctatgcgaac
actcaaattaatgttgaatgcactccggcggagggatatagttttgaatgtccggatgga
gcgacttgtgtcggagcttatatggatcttgctggaagaaaagtatgttgcgaaatgccg
aaaaccacaccgatgccaacgtttgtatactttgtcacttcaataccaagaatggttcga
tataaaacaacagatcatttctgcccatatgccattcgtcacttacaatgccatccatcc
ggctcaacttgtccaatggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAAAATCAATTACCGTCCTCCAT 397 273 826 Antisense
CATCTCGATCTACCGTAAGCCCGGA 693 211 848 Antisense
CCCCTATTTCCGGTGATCATCACTT 625 261 878 Antisense
ATCATCACTTTCTCATCCACAATGA 52 31 893 Antisense
GTTTTACTCGTTGCAACCTTTGTCA 126 447 963 Antisense
TGCCCACCAAGAGCAACGTCGGTAT 618 583 1090 Antisense
TAATGTTGAATGCACTCCGGCGGAG 516 633 1134 Antisense
GAAATGCCGAAAACCACACCGATGC 405 361 1237 Antisense
ACAGATCATTTCTGCCCATATGCCA 1 109 1315 Antisense
TCACTTACAATGCCATCCATCCGGC 698 627 1344 Antisense
ATCCGGCTCAACTTGTCCAATGGGA 480 39 1362 Antisense
Sequence Source Affymetrix Proprietary Database