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[178973_at]

Description T03F7.5 /REP_DB=WormBase Gene ID /WP=CE06348 /TR=Q22117 /GB=CAA98520.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 6.1
(-2.8)
A 		3.6
(-3)
A 		4.2
(-2.9)
A 		69.6
(3)
A 		66
B 5.4
(-2.5)
A 		9.2
(-2)
A 		2.2
(-3)
A 		42.9
(3)
A 		41
C 6.4
(-2.8)
A 		3.5
(-3)
A 		11.6
(-2.5)
A 		95.5
(3)
A 		92
avr 6
(-2.9) 		5.4
(-3) 		6
(-2.9) 		69.3
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 22.2
(3)
A 		2.8
(-3)
A 		7.8
(-1.5)
A 		7.9
(-1.4)
A 		14.9
(0.7)
A 		3.3
(-2.8)
A 		19
B 5.1
(-2.3)
A 		35.1
(3)
A 		18.7
(0.1)
A 		1.2
(-3)
A 		18.2
(0)
A 		2.6
(-2.8)
A 		34
C 29
(0.2)
A 		53.8
(3)
A 		3.5
(-2.7)
A 		5.6
(-2.5)
A 		2.4
(-2.9)
A 		1.1
(-3)
A 		53
avr 18.8
(0.5) 		30.6
(3) 		10
(-1.4) 		4.9
(-2.4) 		11.8
(-1) 		2.3
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.2
(-2.1)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		10.2
(3)
A 		9
B 1.7
(-2.2)
A 		2.3
(-1.7)
A 		0.5
(-3)
A 		9.1
(3)
A 		9
C 2.1
(-2.6)
A 		1
(-3)
A 		4.1
(-1.8)
A 		16.1
(3)
A 		15
avr 2
(-2.7) 		1.4
(-3) 		1.9
(-2.7) 		11.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.1
(2.4)
A 		1
(-2.7)
A 		1.7
(-1.5)
A 		2
(-1.1)
A 		4.5
(3)
A 		0.8
(-3)
A 		4
B 1.8
(-2.2)
A 		11.7
(3)
A 		4.5
(-0.8)
A 		0.3
(-3)
A 		7.4
(0.7)
A 		1
(-2.6)
A 		11
C 10.7
(0.9)
A 		16.4
(3)
A 		0.9
(-2.8)
A 		1.1
(-2.7)
A 		0.8
(-2.9)
A 		0.4
(-3)
A 		16
avr 5.5
(0.2) 		9.7
(3) 		2.4
(-1.9) 		1.1
(-2.7) 		4.2
(-0.7) 		0.7
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13069
Sequence Type Exemplar sequence
Representative Public ID T03F7.5 NCBI
Target Description T03F7.5 /REP_DB=WormBase Gene ID /WP=CE06348 /TR=Q22117 /GB=CAA98520.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073468 NCBI Caenorhabditis elegans T03F7.5 (T03F7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000015859 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11299284:11307567:-1 10/11 None
T03F7.5 ENSEMBL cdna:known chromosome:CEL140:V:11299284:11300548:-1 gene:T03F7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11299283-11300548(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03F7.5
Entrez Gene 188027 Entrez gene
SwissProt Q22117 EMBL-EBI
WormBase CE06348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98517 Hypothetical protein T03F7.3 [Caenorhabditis elegans] ref|NP_505871.2| Serpentine Receptor, class H family member (srh-46) [Caenorhabditis elegans] 1.0E-143
blast CAA98520 Hypothetical protein T03F7.5 [Caenorhabditis elegans] ref|NP_505869.1| T03F7.5 [Caenorhabditis elegans] 1.0E-133
blast CAE75216 Hypothetical protein CBG23165 [Caenorhabditis briggsae] 1.0E-121
blast CAA98518 Hypothetical protein T03F7.4 [Caenorhabditis elegans] ref|NP_505870.2| Serpentine Receptor, class H family member (srh-47) [Caenorhabditis elegans] 1.0E-109
blast CAE75213 Hypothetical protein CBG23162 [Caenorhabditis briggsae] 8.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-58
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.9E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-117
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505869.1 4 75-97,101-123,148-170,185-207
T03F7.5 4 75-97,101-123,148-170,185-207
GENEFINDER00000015859 14 36-58,71-93,98-120,127-149,209-231,339-361,381-403,416-438,524-546,565-587,597-619,626-648,709-731,764-786
Sequence
Target Sequence 
>C. ELEGANS:178973_AT
gctgcacaattatttttcaccatcgaaagagtattatccattcaattctcaaaaattcaa
cgtacattatttttcaagttattttttctggcaggatttgtattcgagaatgggtttgca
atatcgtatgtgtacacaaatgtaattcttggtggctatggtcttttttggttggtcact
ttccagttagcagttattgcaaattttccgtttatttattacgcaaagagaattagtagc
tccaaatataaggctaacgtcacaacttattcattgaaaagaaaacacaatgtgagtaac
gttctgaacaaaaataattttttcatgattttgattttggttttgatattacagctttac
aatttttatgaaattgctcgaagttttttgtattcaactgccatttacatgtttgctcaa
ttgacatgtttctgcatactttggggagcagctgtcacaggagtcatgtacagtgtagaa
tttcatagatggttctttgtcatttcgctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCACAATTATTTTTCACCATCG 378 297 157 Antisense
AGAGTATTATCCATTCAATTCTCAA 399 67 184 Antisense
GTAATTCTTGGTGGCTATGGTCTTT 388 461 298 Antisense
TATGGTCTTTTTTGGTTGGTCACTT 353 655 313 Antisense
TGGTCACTTTCCAGTTAGCAGTTAT 510 545 329 Antisense
GCAGTTATTGCAAATTTTCCGTTTA 49 311 346 Antisense
AAGGCTAACGTCACAACTTATTCAT 282 151 406 Antisense
ACTGCCATTTACATGTTTGCTCAAT 207 99 553 Antisense
GACATGTTTCTGCATACTTTGGGGA 539 369 579 Antisense
GGGGAGCAGCTGTCACAGGAGTCAT 3 499 599 Antisense
GATGGTTCTTTGTCATTTCGCTGAT 22 409 644 Antisense
Sequence Source Affymetrix Proprietary Database