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[178972_at]

Description C34F6.7 /REP_DB=WormBase Gene ID /WP=CE15676 /TR=O17638 /GB=CAB03938.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 16      4grp_high_8_8 > 45      6grp_total > 09      4grp_total > 43      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 141.2
(-3)
P 		228.8
(3)
A 		161.9
(-1.6)
A 		173.5
(-0.8)
P 		88
B 185.3
(-1)
A 		194.4
(1.5)
P 		199.7
(3)
P 		178.1
(-3)
P 		22
C 191.4
(-1)
P 		308.4
(3)
A 		165.2
(-1.9)
P 		132.7
(-3)
P 		176
avr 172.6
(-2.2) 		243.9
(3) 		175.6
(-2) 		161.4
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 246.5
(3)
P 		189.4
(0)
P 		132
(-3)
P 		138.4
(-2.7)
P 		195.7
(0.3)
M 		157.7
(-1.7)
P 		115
B 208.6
(3)
P 		101
(-2.8)
A 		183
(1.6)
P 		152.1
(-0.1)
P 		109
(-2.4)
P 		98.1
(-3)
P 		111
C 231.6
(3)
P 		86.2
(-3)
A 		145
(-0.6)
P 		134.9
(-1)
P 		181.4
(0.9)
P 		89.4
(-2.9)
A 		145
avr 228.9
(3) 		125.5
(-2.5) 		153.3
(-1) 		141.8
(-1.6) 		162
(-0.5) 		115.1
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 51.4
(3)
P 		49.7
(2.6)
A 		42.3
(0.9)
A 		25.4
(-3)
P 		26
B 59.1
(3)
A 		48
(-0.2)
P 		46.3
(-0.6)
P 		38
(-3)
P 		21
C 63.4
(0.7)
P 		88.7
(3)
A 		57.6
(0.2)
P 		22.4
(-3)
P 		66
avr 58
(2.3) 		62.1
(3) 		48.7
(0.6) 		28.6
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 45.4
(-0.4)
P 		67.4
(3)
P 		28.7
(-3)
P 		35.1
(-2)
P 		59.1
(1.7)
M 		38.4
(-1.5)
P 		39
B 72.6
(3)
P 		33.6
(-3)
A 		44.4
(-1.3)
P 		40.3
(-2)
P 		44.3
(-1.4)
P 		36.6
(-2.5)
P 		39
C 85.8
(3)
P 		26.3
(-3)
A 		36.9
(-1.9)
P 		27.1
(-2.9)
P 		58.7
(0.3)
P 		29.9
(-2.6)
A 		60
avr 67.9
(3) 		42.4
(-1.5) 		36.7
(-2.6) 		34.2
(-3) 		54
(0.5) 		35
(-2.9) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16039
Sequence Type Exemplar sequence
Representative Public ID C34F6.7 NCBI
Target Description C34F6.7 /REP_DB=WormBase Gene ID /WP=CE15676 /TR=O17638 /GB=CAB03938.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077473 NCBI Caenorhabditis elegans C34F6.7 (C34F6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000004416 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11210818:11215392:-1 11/11 None
C34F6.7 ENSEMBL cdna:known chromosome:CEL140:X:11210056:11215398:-1 gene:C34F6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004405 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11210817-11215392(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34F6.7
Entrez Gene 181310 Entrez gene
SwissProt O17638 EMBL-EBI
WormBase CE15676 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23085.1.S1_AT similar to CG14646-PA cfa
DROSOPHILA_2:1634377_AT dm
DROSGENOME1:154876_AT dm
CHICKEN:GGA.13540.1.S1_S_AT similar to hypothetical protein BC009331 gga
CHICKEN:GGAAFFX.13062.1.S1_AT similar to hypothetical protein BC009331 gga
HU35KSUBA:RC_AA127045_AT hypothetical protein BC009331 hs
U133_X3P:HS.300697.2.A1_3P_AT hypothetical protein BC009331 hs
HG-U133_PLUS_2:225587_AT hypothetical protein BC009331 hs
HG-U133B:225587_AT hypothetical protein BC009331 hs
HG-U133_PLUS_2:225588_S_AT hypothetical protein BC009331 hs
HG-U133B:225588_S_AT hypothetical protein BC009331 hs
HG-U95C:48679_AT hypothetical protein BC009331 hs
HG-U95C:48680_AT hypothetical protein BC009331 hs
HG-U95E:89179_AT hypothetical protein BC009331 hs
HG-U95E:75565_AT Hypothetical protein BC009331 hs
MU11KSUBB:W97060_S_AT RIKEN cDNA 0610039G24 gene mm
MG-U74AV2:97392_AT RIKEN cDNA 0610039G24 gene mm
MG-U74AV2:161542_R_AT RIKEN cDNA 0610039G24 gene mm
MOE430A:1415715_AT RIKEN cDNA 0610039G24 gene mm
MOE430B:1415715_AT RIKEN cDNA 0610039G24 gene mm
MOUSE430A_2:1415715_AT RIKEN cDNA 0610039G24 gene mm
MOUSE430_2:1415715_AT RIKEN cDNA 0610039G24 gene mm
MOE430B:1431015_AT RIKEN cDNA 0610039G24 gene mm
MOUSE430_2:1431015_AT RIKEN cDNA 0610039G24 gene mm
MU19KSUBB:TC29786_AT RIKEN cDNA 0610039G24 gene mm
MU19KSUBA:TC24378_AT RIKEN cDNA 0610039G24 gene, mRNA (cDNA clone MGC:27943 IMAGE:3587662) mm
RG-U34B:RC_AI013396_AT Similar to RIKEN cDNA 0610039G24 gene (predicted) rn
RAE230A:1373334_AT Similar to RIKEN cDNA 0610039G24 gene (predicted) rn
RAT230_2:1373334_AT Similar to RIKEN cDNA 0610039G24 gene (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB03938 Hypothetical protein C34F6.7 [Caenorhabditis elegans] ref|NP_509874.1| C34F6.7 [Caenorhabditis elegans] 0.0
blast CAE70681 Hypothetical protein CBG17398 [Caenorhabditis briggsae] 1.0E-160
blast AAL13910 LD39811p [Drosophila melanogaster] 4.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509874.1 4 7-29,55-73,86-105,125-147
C34F6.7 4 7-29,55-73,86-105,125-147
GENEFINDER00000004416 4 7-29,55-73,86-105,125-147
Sequence
Target Sequence 
>C. ELEGANS:178972_AT
ggatgccaatgcttccgaatcaggatgaagaagagcggatacgatcaatttttgtgaaag
tcagcttccgccctgcctatataacaccgttcactatcaccctacgtcaagactattatc
gtcaactgaatgagatactcgaagtaccaatttttgttccccctcatataaacgtcccct
tgactttcatggaggagctgaaagaggattttattcaacgaatagcaagcaacacccgtg
taacacaccgtgtgaaagcaagtgaaaaggatccatgttttgcatgtggaactgaagaaa
atatggtgaaaattgaaagatcttgcgatggccaggagcaacgagttttctttcacgaca
ttggcgcccgattcactccaccgtgcgagaactgcatttgtcgtcctttatggtgcagaa
gttgcctagctcaaattttcattggaaggcagaacatagataacgtctaccgatatgagt
accatcgaggaagtgcgcaatgcccaacttgcagaaagaatttctgcatccgggacgtgc
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCCAATGCTTCCGAATCAGGA 629 513 671 Antisense
TTTTTGTGAAAGTCAGCTTCCGCCC 684 673 719 Antisense
ATATAACACCGTTCACTATCACCCT 683 15 749 Antisense
ACTATCACCCTACGTCAAGACTATT 425 101 763 Antisense
ATAAACGTCCCCTTGACTTTCATGG 583 23 838 Antisense
CAACACCCGTGTAACACACCGTGTG 590 189 900 Antisense
GAGCAACGAGTTTTCTTTCACGACA 583 389 1006 Antisense
TCACTCCACCGTGCGAGAACTGCAT 574 627 1043 Antisense
AGAACTGCATTTGTCGTCCTTTATG 17 73 1058 Antisense
AGGAAGTGCGCAATGCCCAACTTGC 701 53 1158 Antisense
GAATTTCTGCATCCGGGACGTGCAT 155 325 1188 Antisense
Sequence Source Affymetrix Proprietary Database