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[178971_s_at]

Description R10E8.6 /REP_DB=WormBase Gene ID /WP=CE23924 /TR=Q9U384 /GB=CAB04646.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      6grp_total > 09      4grp_total > 60      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 97.9
(-0.5)
P 		93.8
(-1.1)
P 		121.2
(3)
P 		81.5
(-3)
A 		40
B 136
(3)
P 		112.7
(0.9)
A 		89.8
(-1.2)
P 		70.2
(-3)
A 		66
C 67.8
(-3)
P 		104.1
(2.6)
P 		104.6
(2.7)
P 		106.5
(3)
A 		39
avr 100.6
(1.6) 		103.5
(2.5) 		105.2
(3) 		86.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 148
(3)
A 		91.4
(-1)
P 		76.5
(-2.1)
P 		92.4
(-0.9)
P 		75.1
(-2.2)
P 		63.4
(-3)
P 		85
B 66.2
(-1.9)
P 		66.9
(-1.8)
P 		82.9
(0.8)
P 		96
(3)
P 		80.9
(0.5)
P 		59.7
(-3)
P 		36
C 113.6
(3)
P 		101
(1.4)
P 		113.2
(2.9)
P 		76
(-1.9)
A 		107.5
(2.2)
P 		67.4
(-3)
P 		46
avr 109.3
(3) 		86.4
(0) 		90.9
(0.6) 		88.1
(0.2) 		87.8
(0.2) 		63.5
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 35.6
(3)
P 		20.4
(-0.8)
P 		31.7
(2)
P 		11.9
(-3)
A 		24
B 43.4
(3)
P 		27.8
(-0.3)
A 		20.8
(-1.8)
P 		15
(-3)
A 		28
C 22.5
(-1.5)
P 		29.9
(0.9)
P 		36.5
(3)
P 		18
(-3)
A 		19
avr 33.8
(3) 		26
(0.5) 		29.7
(1.7) 		15
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 27.3
(1.2)
A 		32.5
(3)
P 		16.7
(-2.5)
P 		23.4
(-0.2)
P 		22.7
(-0.4)
P 		15.4
(-3)
P 		17
B 23
(-1.6)
P 		22.3
(-2)
P 		20.1
(-3)
P 		25.4
(-0.5)
P 		32.9
(3)
P 		22.2
(-2)
P 		13
C 42.1
(3)
P 		30.8
(0.5)
P 		28.8
(0)
P 		15.3
(-3)
A 		34.8
(1.4)
P 		22.6
(-1.4)
P 		27
avr 30.8
(3) 		28.5
(1.7) 		21.9
(-2) 		21.4
(-2.3) 		30.1
(2.6) 		20.1
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178971_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12691
Sequence Type Exemplar sequence
Representative Public ID R10E8.6 NCBI
Target Description R10E8.6 /REP_DB=WormBase Gene ID /WP=CE23924 /TR=Q9U384 /GB=CAB04646.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075171 NCBI Caenorhabditis elegans R10E8.6 (R10E8.6) mRNA, complete cds. 11/11 None
SNAP00000042683 ENSEMBL cdna:SNAP chromosome:CEL140:V:18261875:18268223:-1 11/11 None
GENEFINDER00000042686 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18261875:18268590:-1 11/11 None
R10E8.6 ENSEMBL cdna:known chromosome:CEL140:V:18261844:18268938:-1 gene:R10E8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18261874-18268938(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E8.6
Entrez Gene 180195 Entrez gene
SwissProt Q9U384 EMBL-EBI
WormBase CE23924 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04646 Hypothetical protein R10E8.6 [Caenorhabditis elegans] ref|NP_507572.1| R10E8.6 [Caenorhabditis elegans] 0.0
blast CAB07551 Hypothetical protein C01B9.1 [Caenorhabditis elegans] ref|NP_496885.1| C01B9.1 [Caenorhabditis elegans] 0.0
blast CAB07258 Hypothetical protein K10G4.1 [Caenorhabditis elegans] ref|NP_507377.1| K10G4.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.4E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.7E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-27
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.9E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.3E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.8E-13
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-27
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.9E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.9E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.8E-13
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-27
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.9E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0011
Sequence
Target Sequence 
>C. ELEGANS:178971_S_AT
gcgagttctgattcggagctccaagcttcaagtgaaatgtttaatcttagccggaaggac
tgagtcggaaattttagagcttctcgagtgtttcgacgccggaaagttgaagcttctgag
actagattttgcaaaaatcactgaagaggatgaaggaacactagagatcgcccgaatagc
ggagacgggtcactggagaactgcagaggagttcgtggtggctgagtgcgtgcttaacac
ggatcccttgaactttaatcaattgttcggaaatttcaagagccaaaaagtttgcctgca
aaacttcacagtggacaacttgctttttatgaagcagaaatccctttccacttccataaa
actattcttcatttgcgaaaatttcgatatggagaacttgtacgagcttattggacggcc
tctgcttgttaccgaggatgcggtcaaagttcggaagtggttcttcaagttaataggcac
attagagcacgttttgctattgagaattaacacggaaaacgggaagattcatgttcagat
gtttcgtatcccagtttcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGTTCTGATTCGGAGCTCCAAG 633 289 4509 Antisense
CTTCTCGAGTGTTTCGACGCCGGAA 437 217 4588 Antisense
GAAGGAACACTAGAGATCGCCCGAA 100 313 4660 Antisense
GGAGACGGGTCACTGGAGAACTGCA 52 519 4689 Antisense
AGGAGTTCGTGGTGGCTGAGTGCGT 251 57 4715 Antisense
GTGCTTAACACGGATCCCTTGAACT 643 469 4738 Antisense
ATGAAGCAGAAATCCCTTTCCACTT 378 43 4837 Antisense
TCCCTTTCCACTTCCATAAAACTAT 300 597 4849 Antisense
TGTACGAGCTTATTGGACGGCCTCT 116 545 4907 Antisense
GGCCTCTGCTTGTTACCGAGGATGC 464 543 4925 Antisense
AGATGTTTCGTATCCCAGTTTCATA 250 67 5045 Antisense
Sequence Source Affymetrix Proprietary Database