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[178970_at]

Description T02E1.2 /REP_DB=WormBase Gene ID /WP=CE13048 /TR=O02293 /GB=CAB04663.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 75      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 82      6grp_total > 66      4grp_total > 47      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 345.4
(3)
P 		212.7
(-1.2)
P 		155.9
(-3)
P 		192.5
(-1.8)
P 		190
B 335.2
(3)
P 		237.1
(-0.7)
P 		178
(-3)
P 		231.3
(-1)
P 		157
C 338.5
(3)
P 		195.9
(-3)
P 		235.1
(-1.4)
P 		219.1
(-2)
P 		143
avr 339.7
(3) 		215.2
(-2) 		189.7
(-3) 		214.3
(-2) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 210.6
(-3)
P 		322.6
(0.8)
P 		387
(3)
P 		299.6
(0)
P 		298.8
(0)
P 		351.8
(1.8)
P 		176
B 309.6
(-2)
P 		328
(-1.4)
P 		366.3
(-0.3)
P 		298.6
(-2.3)
P 		274.7
(-3)
P 		475.5
(3)
P 		201
C 278.7
(-2.8)
P 		330.4
(-0.9)
P 		297.6
(-2.1)
P 		350.6
(-0.2)
P 		272.5
(-3)
P 		441
(3)
P 		169
avr 266.3
(-3) 		327
(-0.7) 		350.3
(0.2) 		316.3
(-1.1) 		282
(-2.4) 		422.8
(3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 125.8
(3)
P 		46.2
(-1.9)
P 		40.8
(-2.2)
P 		28.2
(-3)
P 		98
B 106.9
(3)
P 		58.6
(-1.4)
P 		41.2
(-3)
P 		49.3
(-2.3)
P 		66
C 112
(3)
P 		56.3
(-1.5)
P 		81.9
(0.6)
P 		36.9
(-3)
P 		75
avr 114.9
(3) 		53.7
(-1.8) 		54.6
(-1.7) 		38.1
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 38.8
(-3)
P 		114.7
(3)
P 		84.3
(0.6)
P 		76
(-0.1)
P 		90.2
(1.1)
P 		85.7
(0.7)
P 		76
B 107.7
(-1.3)
P 		109.2
(-1.2)
P 		89
(-2.4)
P 		79.1
(-3)
P 		111.6
(-1)
P 		177.3
(3)
P 		98
C 103.3
(-0.4)
P 		100.8
(-0.6)
P 		75.8
(-2.6)
P 		70.5
(-3)
P 		88.2
(-1.6)
P 		147.6
(3)
P 		77
avr 83.3
(-2.2) 		108.2
(0.2) 		83
(-2.2) 		75.2
(-3) 		96.7
(-0.9) 		136.9
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178970_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2069
Sequence Type Exemplar sequence
Representative Public ID T02E1.2 NCBI
Target Description T02E1.2 /REP_DB=WormBase Gene ID /WP=CE13048 /TR=O02293 /GB=CAB04663.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059840(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059840 NCBI Caenorhabditis elegans T02E1.2 (T02E1.2) mRNA, complete cds. 10/11 None
SNAP00000000256 ENSEMBL cdna:SNAP chromosome:CEL140:I:8228439:8231126:-1 9/11 None
GENEFINDER00000000259 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8228439:8231126:-1 9/11 None
T02E1.2.1 ENSEMBL cdna:known chromosome:CEL140:I:8228158:8231134:-1 gene:T02E1.2 10/11 None
T02E1.2.2 ENSEMBL cdna:known chromosome:CEL140:I:8228197:8231136:-1 gene:T02E1.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8228205-8231057(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02E1.2
Entrez Gene 172605 Entrez gene
SwissProt O02293 EMBL-EBI
WormBase CE32480 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04663 Hypothetical protein T02E1.2 [Caenorhabditis elegans] ref|NP_492241.2| T02E1.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178970_AT
ctttcattattgtctctggcatctcaaaacaacgagaatagtactttcacatggattaat
caaggacgtattgcattcaacatgtttcgcgcaaatcattacatgtttattacgtcggga
attgtcgaatttcgtggaatgctcggaacggcaaactggctcaaattcacgattcgtgac
atgatgcgaagtacatggggaccacgtggaagcaatgtgactgaaagaggaaaaacagtt
tattggattaattttatggaggatgttgccgatcaacacattctactgcacattttacga
ttctgtccgaaacaacacgacgcacatgaaattaattcaaattgcaaattgaaactttgt
tatttgtttaattctaaagtcccccaattgttttgtaaacaatgcatgtctcatcagaaa
atctcaagaattacaggcacattccaaaaatcgctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCATTATTGTCTCTGGCATCTC 293 223 1255 Antisense
GGACGTATTGCATTCAACATGTTTC 530 523 1318 Antisense
GTTTCGCGCAAATCATTACATGTTT 668 449 1338 Antisense
GTCGAATTTCGTGGAATGCTCGGAA 26 475 1378 Antisense
ATGCTCGGAACGGCAAACTGGCTCA 217 43 1393 Antisense
AACTGGCTCAAATTCACGATTCGTG 235 143 1408 Antisense
GATGCGAAGTACATGGGGACCACGT 385 407 1437 Antisense
GTTGCCGATCAACACATTCTACTGC 162 441 1519 Antisense
ACTGCACATTTTACGATTCTGTCCG 146 99 1539 Antisense
GATTCTGTCCGAAACAACACGACGC 316 431 1553 Antisense
ACAGGCACATTCCAAAAATCGCTAG 351 107 1687 Antisense
Sequence Source Affymetrix Proprietary Database