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[178968_at]

Description R01E6.7 /REP_DB=WormBase Gene ID /WP=CE03524 /TR=Q21620 /GB=CAA92189.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 38      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 113
(2.1)
P 		129.1
(3)
P 		68
(-0.5)
A 		24.7
(-3)
A 		104
B 181.4
(3)
P 		95
(-0.9)
A 		48.7
(-3)
A 		124.6
(0.4)
P 		133
C 168.6
(3)
P 		71.6
(-2.4)
A 		61.6
(-3)
A 		114.4
(-0)
A 		107
avr 154.3
(3) 		98.6
(-0.5) 		59.4
(-3) 		87.9
(-1.2) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 151.6
(3)
P 		92.5
(-0.8)
M 		144.9
(2.6)
A 		58.9
(-3)
A 		75.6
(-1.9)
P 		74.8
(-2)
A 		93
B 104
(3)
P 		104
(3)
P 		80
(-1.7)
A 		90.2
(0.3)
M 		76.1
(-2.4)
A 		73.2
(-3)
P 		31
C 103.7
(1.3)
P 		102.8
(1.2)
P 		31.8
(-3)
A 		133.1
(3)
A 		67.6
(-0.9)
A 		79.2
(-0.2)
P 		101
avr 119.8
(3) 		99.8
(0.4) 		85.6
(-1.4) 		94.1
(-0.3) 		73.1
(-3) 		75.7
(-2.7) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 41.1
(3)
P 		28
(0.9)
P 		17.8
(-0.7)
A 		3.6
(-3)
A 		38
B 57.8
(3)
P 		23.5
(-1.4)
A 		11.3
(-3)
A 		26.5
(-1)
P 		47
C 55.8
(3)
P 		20.6
(-2.8)
A 		21.5
(-2.6)
A 		19.3
(-3)
A 		37
avr 51.6
(3) 		24
(-1.7) 		16.9
(-2.9) 		16.5
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 28
(1.4)
P 		32.9
(3)
M 		31.5
(2.5)
A 		14.9
(-3)
A 		22.8
(-0.4)
P 		18.2
(-1.9)
A 		18
B 36.2
(3)
P 		34.6
(2.4)
P 		19.4
(-3)
A 		23.9
(-1.4)
M 		30.9
(1.1)
A 		27.3
(-0.2)
P 		17
C 38.4
(3)
P 		31.4
(1.6)
P 		8.1
(-3)
A 		26.8
(0.7)
A 		21.9
(-0.3)
A 		26.5
(0.6)
P 		30
avr 34.2
(3) 		33
(2.5) 		19.7
(-3) 		21.9
(-2.1) 		25.2
(-0.7) 		24
(-1.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17691
Sequence Type Exemplar sequence
Representative Public ID R01E6.7 NCBI
Target Description R01E6.7 /REP_DB=WormBase Gene ID /WP=CE03524 /TR=Q21620 /GB=CAA92189.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077868 NCBI Caenorhabditis elegans R01E6.7 (R01E6.7) mRNA, complete cds. 11/11 None
SNAP00000031394 ENSEMBL cdna:SNAP chromosome:CEL140:X:13565536:13568734:-1 10/11 None
GENEFINDER00000031400 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13565536:13568789:-1 10/11 None
R01E6.7 ENSEMBL cdna:known chromosome:CEL140:X:13567360:13569873:-1 gene:R01E6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13567359-13568734(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01E6.7
Entrez Gene 187507 Entrez gene
WormBase CE38968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92189 Hypothetical protein R01E6.7 [Caenorhabditis elegans] 1.0E-136
blast CAE63122 Hypothetical protein CBG07420 [Caenorhabditis briggsae] 1.0E-135
blast NP_510269 R01E6.7 [Caenorhabditis elegans] 1.0E-132
blast CAA92189 Hypothetical protein R01E6.7 [Caenorhabditis elegans] 1.0E-132
blast CAE63122 Hypothetical protein CBG07420 [Caenorhabditis briggsae] 1.0E-127
blast NP_510269 R01E6.7 [Caenorhabditis elegans] 1.0E-125
blast NP_510269 R01E6.7 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR010480 EMBL-EBI Pepsin inhibitor-3-likeed 14.0
Pfam IPR010480 EMBL-EBI Pepsin inhibitor-3-likeed 2.7E-30
Pfam IPR010480 EMBL-EBI Pepsin inhibitor-3-likeed 14.0
Pfam IPR010480 EMBL-EBI Pepsin inhibitor-3-likeed 2.7E-30
Sequence
Target Sequence 
>C. ELEGANS:178968_AT
ttccgtctccggttcagttaatatctgcactcggctatctacagacacagtgctcattga
gccggagtaaaaactgttccagtgaccatgtgcacaatattatggctcaatgtgaagagc
aaatgaagccattggccggttacccacagtacgatcggcataggttattaagaattaaaa
tggacacctcaaaaaagcttttgatgtacgacgaaacggacaaagaacgagagtgcctgg
ttgttagatctacactctccgaaatgtactcactccatcacgctaattgctaccattccc
tcgttacacgatgcttgtgcgagcgtctccgattcgacgtgcaatgtggaatcaattgcg
atcaactcgagccgacgtcaccagatcaagacacgctggcgtgggatgaatggaaggaag
caaggttggtgcacagtaacgtatcgaaaacaaaacacatttctacagtactttcaattc
tctctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGTCTCCGGTTCAGTTAATATC 492 699 233 Antisense
TTAATATCTGCACTCGGCTATCTAC 53 685 250 Antisense
ATGAAGCCATTGGCCGGTTACCCAC 594 43 355 Antisense
GTTACCCACAGTACGATCGGCATAG 433 445 371 Antisense
TGGTTGTTAGATCTACACTCTCCGA 172 551 470 Antisense
TCTCCGAAATGTACTCACTCCATCA 249 611 488 Antisense
ACTCCATCACGCTAATTGCTACCAT 470 99 504 Antisense
TACACGATGCTTGTGCGAGCGTCTC 107 643 537 Antisense
AGCGTCTCCGATTCGACGTGCAATG 455 81 554 Antisense
CAATTGCGATCAACTCGAGCCGACG 62 181 585 Antisense
TACAGTACTTTCAATTCTCTCTGCT 64 645 696 Antisense
Sequence Source Affymetrix Proprietary Database