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[178967_at]

Description ZC434.7 /REP_DB=WormBase Gene ID /WP=CE06582 /TR=Q23317 /GB=CAB00061.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 81      6grp_total > 63      4grp_total > 53      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 397.2
(3)
P 		363.3
(2.2)
P 		235.3
(-1)
P 		153.7
(-3)
P 		244
B 383.4
(3)
P 		331.5
(1.2)
P 		241.5
(-2)
P 		213.3
(-3)
P 		170
C 448.8
(3)
P 		280.8
(-1.8)
P 		309.9
(-0.9)
P 		236.6
(-3)
P 		212
avr 409.8
(3) 		325.2
(0.6) 		262.2
(-1.2) 		201.2
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 160.4
(-3)
P 		256.2
(-0.6)
P 		396.7
(3)
P 		294.8
(0.4)
P 		229.7
(-1.2)
P 		245.9
(-0.8)
P 		236
B 238.4
(-2.7)
P 		232
(-3)
P 		379.6
(3)
P 		294
(-0.5)
P 		232.2
(-3)
P 		279.5
(-1.1)
P 		148
C 223.8
(-2.8)
P 		254.4
(-0.9)
P 		317
(3)
P 		267.8
(-0.1)
P 		221.3
(-3)
P 		268.1
(-0.1)
P 		96
avr 207.5
(-3) 		247.5
(-1.5) 		364.4
(3) 		285.5
(-0) 		227.7
(-2.2) 		264.5
(-0.8) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 144.6
(3)
P 		78.9
(-0.2)
P 		61.5
(-1.1)
P 		22.5
(-3)
P 		122
B 122.3
(3)
P 		81.9
(-0.2)
P 		56
(-2.2)
P 		45.5
(-3)
P 		77
C 148.6
(3)
P 		80.7
(-0.7)
P 		108
(0.8)
P 		39.9
(-3)
P 		109
avr 138.5
(3) 		80.5
(-0.4) 		75.2
(-0.7) 		36
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 29.6
(-3)
P 		91.1
(3)
P 		86.4
(2.5)
P 		74.8
(1.4)
P 		69.3
(0.9)
P 		59.9
(-0)
P 		62
B 83
(-1.7)
P 		77.2
(-3)
P 		92.2
(0.3)
P 		77.9
(-2.8)
P 		94.3
(0.8)
P 		104.2
(3)
P 		27
C 83
(1.9)
P 		77.6
(1)
P 		80.7
(1.5)
P 		53.9
(-3)
P 		71.6
(-0)
P 		89.8
(3)
P 		36
avr 65.2
(-3) 		82
(1.8) 		86.4
(3) 		68.9
(-2) 		78.4
(0.7) 		84.6
(2.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.543
Sequence Type Exemplar sequence
Representative Public ID ZC434.7 NCBI
Target Description ZC434.7 /REP_DB=WormBase Gene ID /WP=CE06582 /TR=Q23317 /GB=CAB00061.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060312 NCBI Caenorhabditis elegans ZC434.7 (ZC434.7) mRNA, complete cds. 11/11 None
GENEFINDER00000018751 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10354374:10356076:1 11/11 None
SNAP00000018740 ENSEMBL cdna:SNAP chromosome:CEL140:I:10354858:10356076:1 11/11 None
ZC434.7.2 ENSEMBL cdna:known chromosome:CEL140:I:10353859:10356099:1 gene:ZC434.7 11/11 None
ZC434.7.1 ENSEMBL cdna:known chromosome:CEL140:I:10353860:10356099:1 gene:ZC434.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10354205-10356007(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC434.7
Entrez Gene 172906 Entrez gene
SwissProt Q23317 EMBL-EBI
WormBase CE06582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00061 Hypothetical protein ZC434.7 [Caenorhabditis elegans] ref|NP_492713.1| ZC434.7 [Caenorhabditis elegans] 0.0
blast CAE73798 Hypothetical protein CBG21348 [Caenorhabditis briggsae] 1.0E-119
blast CAE73798 Hypothetical protein CBG21348 [Caenorhabditis briggsae] 1.0E-116
blast CAE73798 Hypothetical protein CBG21348 [Caenorhabditis briggsae] 4.0E-93
Sequence
Target Sequence 
>C. ELEGANS:178967_AT
gagagaatgtggttgtcgttgatgcattgaatttcggttatggagtggatccgaaagaat
gggatgatatttccagcaaattcgagcatgtattctttgcaactagacggatatcaaacc
aaaaactacggaaagaagtgatggaaagatataatggaaatgctctgttttgtgataaat
tgtccacagatgacctcataataattcgaatggctctagaattcggtccggagacgtcaa
ttgttacaaatgataaatatactgatcatcgttcagcaatctgtaatggtgatcaaaagt
tggagaaaattttcgacgattttctcactgatgcatcacatcgacacttccatggccgaa
tcgagacgagacggaatttcaatattcgaattcgtaatccggataatagaatatggatac
tgcccgttatgaactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGAATGTGGTTGTCGTTGATGC 80 395 932 Antisense
ATTTCCAGCAAATTCGAGCATGTAT 485 17 1000 Antisense
GAGCATGTATTCTTTGCAACTAGAC 279 389 1015 Antisense
AATTGTCCACAGATGACCTCATAAT 246 179 1109 Antisense
ATGGCTCTAGAATTCGGTCCGGAGA 338 53 1141 Antisense
GGTCCGGAGACGTCAATTGTTACAA 124 503 1156 Antisense
GATCATCGTTCAGCAATCTGTAATG 181 421 1195 Antisense
TTTTCGACGATTTTCTCACTGATGC 361 677 1241 Antisense
CTCACTGATGCATCACATCGACACT 100 229 1255 Antisense
CACTTCCATGGCCGAATCGAGACGA 364 197 1276 Antisense
ATGGATACTGCCCGTTATGAACTCA 323 51 1344 Antisense
Sequence Source Affymetrix Proprietary Database