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[178966_at]

Description R06B9.5 /REP_DB=WormBase Gene ID /WP=CE23900 /TR=Q9U397 /GB=CAB54283.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 14.7
(-3)
A 		22.1
(-1.5)
A 		33.8
(0.9)
A 		43.8
(3)
A 		29
B 24.1
(1.9)
A 		27.3
(2.8)
A 		5.4
(-3)
A 		28.1
(3)
A 		23
C 6.1
(-2.9)
A 		5.8
(-3)
A 		34.9
(3)
A 		30.8
(2.2)
A 		29
avr 15
(-3) 		18.4
(-1.9) 		24.7
(0) 		34.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 4.8
(-3)
A 		8.7
(-2.9)
A 		47
(-1.6)
A 		89.1
(-0.2)
A 		136.2
(1.4)
A 		184.8
(3)
A 		180
B 17.2
(-2.8)
A 		28.3
(-2.3)
A 		13.8
(-3)
A 		76.7
(0.1)
A 		113.7
(2)
A 		134.3
(3)
A 		121
C 47.6
(-3)
A 		62.5
(-2.3)
A 		59.3
(-2.5)
A 		85.1
(-1.3)
A 		183.5
(3)
A 		116.6
(0)
A 		136
avr 23.2
(-3) 		33.2
(-2.5) 		40
(-2.2) 		83.6
(-0) 		144.5
(3) 		145.2
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.3
(-2.3)
A 		4.8
(-3)
A 		8.8
(3)
A 		6.4
(-0.6)
A 		4
B 7.7
(3)
A 		6.7
(2.1)
A 		1.3
(-3)
A 		6
(1.4)
A 		6
C 2
(-2.8)
A 		1.7
(-3)
A 		12.2
(3)
A 		5.2
(-1)
A 		11
avr 5
(-1.8) 		4.4
(-3) 		7.4
(3) 		5.9
(0) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.1
(-2.7)
A 		10.2
(-1.7)
A 		22.6
(-0)
A 		41.1
(2.5)
A 		45
(3)
A 		44
B 6
(-2.7)
A 		9.4
(-2.2)
A 		3.4
(-3)
A 		20.3
(-0.8)
A 		46.2
(2.5)
A 		50.1
(3)
A 		47
C 17.6
(-2.7)
A 		19.1
(-2.5)
A 		15.1
(-3)
A 		17.1
(-2.7)
A 		59.4
(3)
A 		39
(0.2)
A 		44
avr 8.2
(-3) 		10.5
(-2.7) 		9.6
(-2.8) 		20
(-1.3) 		48.9
(3) 		44.7
(2.4) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178966_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3495
Sequence Type Exemplar sequence
Representative Public ID R06B9.5 NCBI
Target Description R06B9.5 /REP_DB=WormBase Gene ID /WP=CE23900 /TR=Q9U397 /GB=CAB54283.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064479 NCBI Caenorhabditis elegans R06B9.5 (R06B9.5) mRNA, complete cds. 11/11 None
SNAP00000002408 ENSEMBL cdna:SNAP chromosome:CEL140:II:13736248:13739638:1 11/11 None
R06B9.5 ENSEMBL cdna:known chromosome:CEL140:II:13736246:13736830:1 gene:R06B9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002412 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13736244-13736827(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06B9.5
Entrez Gene 175019 Entrez gene
SwissProt Q9U397 EMBL-EBI
WormBase CE23900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54283 Hypothetical protein R06B9.5 [Caenorhabditis elegans] ref|NP_496880.1| R06B9.5 [Caenorhabditis elegans] 3.0E-35
blast CAB54283 Hypothetical protein R06B9.5 [Caenorhabditis elegans] ref|NP_496880.1| R06B9.5 [Caenorhabditis elegans] 1.0E-33
blast CAE73276 Hypothetical protein CBG20694 [Caenorhabditis briggsae] 1.0E-15
blast CAE73276 Hypothetical protein CBG20694 [Caenorhabditis briggsae] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:178966_AT
tgacgtacgatttgtctcgcttgacacaggatcttccacacgaaacatcagagccgtcgc
cgaaatcggcgtcgacgctcagcttgccacccggcgaatcggaccaaaacgggaacacgt
cgagtcacgagggtgtcacaccaccacgtcgccgctgcaccataagccgctcatcgtcaa
tcgactcgatttctggggaaacactaatcagcgagtatttctcgtccgacgagctcgaca
agc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTACGATTTGTCTCGCTTGAC 176 571 14 Antisense
CGCTTGACACAGGATCTTCCACACG 653 253 31 Antisense
GATCTTCCACACGAAACATCAGAGC 650 419 43 Antisense
ACATCAGAGCCGTCGCCGAAATCGG 207 105 58 Antisense
TCGCCGAAATCGGCGTCGACGCTCA 361 595 70 Antisense
AAACGGGAACACGTCGAGTCACGAG 449 127 120 Antisense
TCGAGTCACGAGGGTGTCACACCAC 705 601 133 Antisense
CGCTCATCGTCAATCGACTCGATTT 560 255 181 Antisense
ATCGACTCGATTTCTGGGGAAACAC 480 35 193 Antisense
GGGGAAACACTAATCAGCGAGTATT 250 499 208 Antisense
TTCTCGTCCGACGAGCTCGACAAGC 171 689 232 Antisense
Sequence Source Affymetrix Proprietary Database