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[178965_at]

Description C09G1.1 /REP_DB=WormBase Gene ID /WP=CE02126 /TR=Q17862 /GB=CAA90538.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 02      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 25.2
(-1.6)
A 		19
(-2)
A 		4
(-3)
A 		93.9
(3)
A 		90
B 7.1
(-2)
A 		14.5
(-0.5)
A 		32.1
(3)
A 		1.8
(-3)
A 		30
C 8.8
(-2.4)
A 		2.2
(-3)
A 		8.6
(-2.4)
A 		63.9
(3)
A 		62
avr 13.7
(-2.7) 		11.9
(-3) 		14.9
(-2.6) 		53.2
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 3.6
(-2.6)
A 		3.1
(-2.7)
A 		12.5
(-0.9)
A 		3.2
(-2.7)
A 		33.6
(3)
A 		1.5
(-3)
A 		32
B 13.2
(0.7)
A 		15.6
(1.7)
A 		10.4
(-0.4)
A 		4.3
(-3)
A 		18.6
(3)
A 		16.3
(2)
A 		14
C 24
(1.7)
A 		9.3
(-2)
A 		9.3
(-2)
A 		5.4
(-3)
A 		29.3
(3)
A 		9.4
(-2)
A 		24
avr 13.6
(-0.6) 		9.3
(-1.7) 		10.7
(-1.3) 		4.3
(-3) 		27.2
(3) 		9.1
(-1.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.2
(0.8)
A 		4.1
(-1.6)
A 		1.1
(-3)
A 		13.8
(3)
A 		13
B 2.3
(-1.4)
A 		3.6
(-0.3)
A 		7.4
(3)
A 		0.4
(-3)
A 		7
C 2.9
(-1.6)
A 		0.6
(-3)
A 		3
(-1.6)
A 		10.8
(3)
A 		10
avr 4.8
(-0.8) 		2.8
(-3) 		3.8
(-1.9) 		8.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.7
(-2.8)
A 		1.1
(-2.6)
A 		2.7
(-1.6)
A 		0.8
(-2.8)
A 		10.2
(3)
A 		0.4
(-3)
A 		10
B 4.6
(0.2)
A 		5.2
(0.8)
A 		2.5
(-1.7)
A 		1.1
(-3)
A 		7.6
(3)
A 		6.1
(1.6)
A 		7
C 8.9
(2.6)
A 		2.8
(-1.8)
A 		2.4
(-2.1)
A 		1.1
(-3)
A 		9.5
(3)
A 		3.1
(-1.6)
A 		8
avr 4.7
(-0.3) 		3
(-1.5) 		2.5
(-1.9) 		1
(-3) 		9.1
(3) 		3.2
(-1.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17606
Sequence Type Exemplar sequence
Representative Public ID C09G1.1 NCBI
Target Description C09G1.1 /REP_DB=WormBase Gene ID /WP=CE02126 /TR=Q17862 /GB=CAA90538.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078217(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078217 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-11) (pqn-11) mRNA, complete cds. 10/11 None
GENEFINDER00000010249 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15966027:15972215:-1 10/11 None
C09G1.1 ENSEMBL cdna:known chromosome:CEL140:X:15966027:15972215:-1 gene:C09G1.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010240 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15966026-15972215(-) 97.38 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-11
Ensembl C09G1.1
Entrez Gene 182458 Entrez gene
SwissProt Q17862 EMBL-EBI
WormBase CE37313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90538 Hypothetical protein C09G1.1 [Caenorhabditis elegans] ref|NP_510618.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-11) [Caenorhabditis elegans] 0.0
blast CAA90538 Hypothetical protein C09G1.1 [Caenorhabditis elegans] ref|NP_510618.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-11) [Caenorhabditis elegans] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:178965_AT
tggaaccgcaaccatcagtccaattacggaaatcgaatcaataacaaccaaagatatcat
aatgagagacaacagcaacacagaaacagatggaataatggagaaaataattatcaagca
agtagtcaaagaatttgtttaatgagaaaaatgtttaaaggtggagtaaagtcgattcgc
atgttatcgcatgaaacaaccactggagccatcaaacagatcgggactgacgccttatca
acggtccagaaaacagaatcaatggcaaccgacgcaatggtgaacgacggagaaaccacc
attggagccatcaagcagatcggaacggacacctcagcaatgggcctcagcatcaatgct
cacttcacaatggaaaccaatacaatgaaccacatgtttatcaaactcgaaatccctatc
agaatgatcaaaggaatcactcaatttccactgacagtcgataccacagatccaatgaga
accgctacaatgatggaggtcgaagatatcaagatgacagacgtgattatagacgtgatg
cggacggtcgtggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAACCGCAACCATCAGTCCAATT 577 545 949 Antisense
ATCGCATGAAACAACCACTGGAGCC 462 37 1134 Antisense
AAACAGATCGGGACTGACGCCTTAT 345 127 1162 Antisense
GAATCAATGGCAACCGACGCAATGG 589 327 1204 Antisense
GGAGAAACCACCATTGGAGCCATCA 662 519 1237 Antisense
CAAGCAGATCGGAACGGACACCTCA 389 185 1260 Antisense
GCAATGGGCCTCAGCATCAATGCTC 352 321 1285 Antisense
GCATCAATGCTCACTTCACAATGGA 285 309 1298 Antisense
GAATCACTCAATTTCCACTGACAGT 678 327 1382 Antisense
GACAGTCGATACCACAGATCCAATG 379 369 1401 Antisense
TAGACGTGATGCGGACGGTCGTGGG 493 649 1478 Antisense
Sequence Source Affymetrix Proprietary Database