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[178962_at]

Description F53B2.4 /REP_DB=WormBase Gene ID /WP=CE05918 /TR=Q20705 /GB=CAA98129.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 20      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 55.2
(-1.1)
A 		61.7
(-0.8)
A 		10.4
(-3)
A 		150.4
(3)
A 		140
B 65.4
(0.1)
A 		51.5
(-0.7)
A 		8.5
(-3)
A 		119.2
(3)
A 		111
C 42.3
(-1.8)
A 		39.7
(-1.9)
A 		2.4
(-3)
A 		198.7
(3)
A 		196
avr 54.3
(-1.1) 		51
(-1.2) 		7.1
(-3) 		156.1
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 12.6
(-2.3)
A 		42.7
(1.4)
A 		55.4
(3)
A 		6.7
(-3)
A 		38.5
(0.9)
A 		7.2
(-2.9)
A 		49
B 33.5
(0.4)
A 		54.7
(3)
A 		41.6
(1.4)
A 		5.3
(-3)
A 		27.1
(-0.4)
A 		35.8
(0.7)
A 		49
C 51.5
(2.2)
A 		59.3
(3)
A 		23.3
(-0.9)
A 		3.4
(-3)
A 		4.8
(-2.8)
A 		16.2
(-1.6)
A 		56
avr 32.5
(0.5) 		52.2
(3) 		40.1
(1.5) 		5.1
(-3) 		23.5
(-0.7) 		19.7
(-1.1) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 20.1
(2.4)
A 		13.4
(0.3)
A 		2.7
(-3)
A 		22
(3)
A 		19
B 20.9
(1.8)
A 		12.7
(-0.3)
A 		2
(-3)
A 		25.4
(3)
A 		23
C 14
(-0.6)
A 		11.4
(-1.1)
A 		0.9
(-3)
A 		33.5
(3)
A 		33
avr 18.3
(0.9) 		12.5
(-0.5) 		1.9
(-3) 		27
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.3
(-2.7)
A 		15.2
(3)
A 		12.1
(1.6)
A 		1.7
(-3)
A 		11.6
(1.4)
A 		1.8
(-3)
A 		14
B 11.7
(0.7)
A 		18.2
(3)
A 		10.1
(0.1)
A 		1.4
(-3)
A 		11
(0.4)
A 		13.4
(1.3)
A 		17
C 19.1
(3)
A 		18.1
(2.7)
A 		5.9
(-1.3)
A 		0.7
(-3)
A 		1.6
(-2.7)
A 		5.4
(-1.5)
A 		18
avr 11
(0.7) 		17.2
(3) 		9.4
(0.1) 		1.3
(-3) 		8.1
(-0.4) 		6.9
(-0.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10179
Sequence Type Exemplar sequence
Representative Public ID F53B2.4 NCBI
Target Description F53B2.4 /REP_DB=WormBase Gene ID /WP=CE05918 /TR=Q20705 /GB=CAA98129.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069996 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-13) (sru-13) mRNA, complete cds. 11/11 None
GENEFINDER00000026531 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12521428:12522494:-1 10/11 None
F53B2.4 ENSEMBL cdna:known chromosome:CEL140:IV:12521211:12522407:-1 gene:F53B2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12521216-12522413(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-13
Ensembl F53B2.4
Entrez Gene 186151 Entrez gene
SwissProt Q20705 EMBL-EBI
WormBase CE38193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 1.0E-164
blast CAA16356 Hypothetical protein Y45F10B.5 [Caenorhabditis elegans] ref|NP_502617.2| Serpentine Receptor, class U family member (sru-12) [Caenorhabditis elegans] 1.0E-143
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 1.0E-126
blast CAA16358 Hypothetical protein Y45F10B.6 [Caenorhabditis elegans] ref|NP_502618.2| Serpentine Receptor, class U family member (sru-11) [Caenorhabditis elegans] 1.0E-111
blast CAA16356 Hypothetical protein Y45F10B.5 [Caenorhabditis elegans] ref|NP_502617.2| Serpentine Receptor, class U family member (sru-12) [Caenorhabditis elegans] 1.0E-107
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 1.0E-106
blast CAE59873 Hypothetical protein CBG03351 [Caenorhabditis briggsae] 3.0E-91
blast CAA16356 Hypothetical protein Y45F10B.5 [Caenorhabditis elegans] ref|NP_502617.2| Serpentine Receptor, class U family member (sru-12) [Caenorhabditis elegans] 2.0E-89
blast CAA16358 Hypothetical protein Y45F10B.6 [Caenorhabditis elegans] ref|NP_502618.2| Serpentine Receptor, class U family member (sru-11) [Caenorhabditis elegans] 3.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 6.6E-88
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 6.6E-88
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 6.6E-88
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502397.2 6 23-45,66-88,112-134,155-177,207-229,250-272
F53B2.4 5 5-27,50-72,93-115,145-167,188-210
GENEFINDER00000026531 5 34-56,79-101,122-144,170-192,213-235
Sequence
Target Sequence 
>C. ELEGANS:178962_AT
tatttccattccttttatcaacgttacgattgattcccgtttatttcccgcgcagacata
atcaactatgcgcccggctatctaattttgcaattccattcatctacctctacccattca
tatttacattctccctgataccggctctaggatcatgtcgacaacttttgggcccttata
aatttggttctatttttatttggtttacggggaactggtttgatataaagttgataaatg
gcttagtgctcaatttggccatttggcttctcctatgcattatttcaaatttaacacttt
taataaaactgaagaagttaaaaaataatcgaaaaagtgcaattctccaacgagcggaat
tatctctatcgctgacaacattatccatgcttttatcgtttctgacaaacctggcatgtg
cattaatattcttaatatttccatcactgacagcatatttcattgctcttcggccatttg
gaaatgattgtgagatttgtgttggtccgtggatcttctatatgacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTCCATTCCTTTTATCAACGTT 200 663 203 Antisense
TATTTCCCGCGCAGACATAATCAAC 86 663 244 Antisense
TCAACTATGCGCCCGGCTATCTAAT 649 629 264 Antisense
ACCCATTCATATTTACATTCTCCCT 62 91 314 Antisense
CCGGCTCTAGGATCATGTCGACAAC 517 265 343 Antisense
ATTTGGCCATTTGGCTTCTCCTATG 552 17 455 Antisense
AAAGTGCAATTCTCCAACGAGCGGA 45 123 536 Antisense
GAATTATCTCTATCGCTGACAACAT 400 325 559 Antisense
TATCCATGCTTTTATCGTTTCTGAC 387 657 584 Antisense
GTTTCTGACAAACCTGGCATGTGCA 5 451 600 Antisense
GGTCCGTGGATCTTCTATATGACAC 689 501 706 Antisense
Sequence Source Affymetrix Proprietary Database