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[178961_at]

Description T06E6.5 /REP_DB=WormBase Gene ID /WP=CE16365 /TR=O62361 /GB=CAB03320.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 23.1
(3)
A 		2.3
(-3)
A 		2.4
(-3)
A 		6.9
(-1.7)
A 		21
B 1.8
(-3)
A 		21.5
(3)
A 		2.2
(-2.9)
A 		1.8
(-3)
A 		20
C 10.1
(-1.2)
A 		1.9
(-2.7)
A 		0.4
(-3)
A 		32.4
(3)
A 		32
avr 11.7
(2) 		8.6
(0.5) 		1.7
(-3) 		13.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 4.2
(-3)
A 		17.4
(-0.7)
A 		38.6
(3)
A 		6
(-2.7)
A 		32.7
(2)
A 		23.4
(0.3)
A 		34
B 14
(-1.9)
A 		2.7
(-3)
A 		33.2
(-0.1)
A 		66
(3)
P 		26.6
(-0.7)
A 		14
(-1.9)
A 		63
C 12.3
(-1.2)
A 		22.7
(3)
A 		7.8
(-3)
A 		8.6
(-2.7)
A 		15.6
(0.1)
A 		15.5
(0.1)
A 		15
avr 10.2
(-3) 		14.3
(-1.5) 		26.5
(2.9) 		26.9
(3) 		25
(2.3) 		17.6
(-0.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.4
(3)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		1
(-2.6)
A 		8
B 0.6
(-2.8)
A 		5.3
(3)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		5
C 3.3
(0.6)
A 		0.5
(-2.6)
A 		0.1
(-3)
A 		5.5
(3)
A 		5
avr 4.1
(3) 		2.1
(-0.2) 		0.4
(-3) 		2.3
(0.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.8
(-3)
A 		6.2
(0.6)
A 		8.4
(2)
A 		1.5
(-2.5)
A 		9.9
(3)
A 		5.7
(0.2)
A 		9
B 4.9
(-1.6)
A 		0.9
(-3)
A 		8.1
(-0.4)
A 		17.5
(3)
P 		10.8
(0.6)
A 		5.2
(-1.4)
A 		17
C 4.6
(0.3)
A 		6.9
(3)
A 		2
(-2.7)
A 		1.7
(-3)
A 		5
(0.8)
A 		5.2
(1)
A 		5
avr 3.4
(-3) 		4.7
(-1.5) 		6.2
(0.2) 		6.9
(1) 		8.6
(3) 		5.4
(-0.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12557
Sequence Type Exemplar sequence
Representative Public ID T06E6.5 NCBI
Target Description T06E6.5 /REP_DB=WormBase Gene ID /WP=CE16365 /TR=O62361 /GB=CAB03320.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074428 NCBI Caenorhabditis elegans T06E6.5 (T06E6.5) mRNA, complete cds. 11/11 None
SNAP00000027744 ENSEMBL cdna:SNAP chromosome:CEL140:V:15402913:15406971:1 9/11 None
GENEFINDER00000027753 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15404676:15409025:1 11/11 None
T06E6.5 ENSEMBL cdna:known chromosome:CEL140:V:15404676:15407027:1 gene:T06E6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15404675-15407027(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06E6.5
Entrez Gene 188184 Entrez gene
SwissProt O62361 EMBL-EBI
WormBase CE16365 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03320 Hypothetical protein T06E6.5 [Caenorhabditis elegans] ref|NP_506829.1| T06E6.5 [Caenorhabditis elegans] 0.0
blast CAB03314 Hypothetical protein T06E6.4 [Caenorhabditis elegans] ref|NP_506828.2| Serpentine Receptor, class I family member (sri-7) [Caenorhabditis elegans] 1.0E-152
blast CAB01514 Hypothetical protein T09E8.5 [Caenorhabditis elegans] ref|NP_506280.2| Serpentine Receptor, class I family member (sri-6) [Caenorhabditis elegans] 1.0E-110
blast CAB03316 Hypothetical protein T06E6.7 [Caenorhabditis elegans] ref|NP_506830.2| Serpentine Receptor, class H family member (srh-258) [Caenorhabditis elegans] 6.0E-46
blast CAB04646 Hypothetical protein R10E8.6 [Caenorhabditis elegans] ref|NP_507572.1| R10E8.6 [Caenorhabditis elegans] 7.0E-45
blast CAB04646 Hypothetical protein R10E8.6 [Caenorhabditis elegans] ref|NP_507572.1| R10E8.6 [Caenorhabditis elegans] 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.5E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-20
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.2E-31
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.3E-25
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-6
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.0E-22
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506829.1 1 20-37
T06E6.5 1 20-37
SNAP00000027744 6 15-37,58-80,95-114,155-177,197-219,231-253
GENEFINDER00000027753 4 20-37,748-770,833-855,904-926
Sequence
Target Sequence 
>C. ELEGANS:178961_AT
gaaactgtcttcgaagcatgtgatcatgttgagaagctcacaagagctcttatggcaaga
ggttgttggattaaagttaaaagtttgcagctgaagaccagaacacaagcggattttgta
agcatattgtcttgctttgattcggattatctaaagacggtggagctgggaaatgatatt
tccactgataaagtgctaaaaacgaatgatattgtgaagctagatcaatggaagaatgca
gaaaaactagtatctacttgtcgtgttaaaattgtaaattttaaacatttgagtcacttt
ttaaatgttgaaattactgtggaatctgttgaatttgaagatttagacgttttaaaacag
gccttcatcgaatcggaagccacaaagaaatatctcattatttgcgataactttgaactt
gagcagttgtacgaaaaattcggaagaccaataattgaaatagtggatcaaattaagcat
cggaagtggtttttcaaatccaataacggaaatgctttagctatttatattcatattaga
gaggatgggaaaacttgtattcagatgcaccatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGTCTTCGAAGCATGTGATC 635 357 1375 Antisense
GAAGACCAGAACACAAGCGGATTTT 694 337 1467 Antisense
AGCGGATTTTGTAAGCATATTGTCT 568 81 1482 Antisense
ATATTGTCTTGCTTTGATTCGGATT 402 19 1498 Antisense
TATCTAAAGACGGTGGAGCTGGGAA 646 197 1522 Antisense
CTAGTATCTACTTGTCGTGTTAAAA 337 219 1621 Antisense
GACGTTTTAAAACAGGCCTTCATCG 346 91 1720 Antisense
GGCCTTCATCGAATCGGAAGCCACA 492 543 1734 Antisense
TATTTGCGATAACTTTGAACTTGAG 161 661 1773 Antisense
GCATCGGAAGTGGTTTTTCAAATCC 382 309 1851 Antisense
AAAACTTGTATTCAGATGCACCATG 405 129 1924 Antisense
Sequence Source Affymetrix Proprietary Database