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[178959_at]

Description F48F5.2 /REP_DB=WormBase Gene ID /WP=CE18708 /TR=Q9XV09 /GB=CAB04412.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 106.4
(0.3)
A 		97.5
(-0.1)
A 		168.3
(3)
A 		30.6
(-3)
A 		138
B 97.3
(2.2)
A 		100.2
(3)
A 		93
(1.1)
A 		77.9
(-3)
A 		22
C 97.2
(-1.8)
A 		153.9
(3)
A 		115.9
(-0.2)
A 		83.1
(-3)
A 		71
avr 100.3
(0.5) 		117.2
(2.2) 		125.7
(3) 		63.9
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 68.5
(1)
A 		74.5
(3)
A 		60.5
(-1.6)
A 		67.9
(0.8)
A 		56.3
(-3)
A 		69.4
(1.3)
A 		18
B 83.9
(1.3)
A 		55.5
(-0.6)
A 		108.5
(3)
A 		64.1
(-0)
A 		73.8
(0.6)
A 		20
(-3)
A 		89
C 90
(3)
A 		61.7
(0.7)
A 		90.3
(3)
A 		15.4
(-3)
A 		75.2
(1.8)
A 		41.5
(-0.9)
A 		75
avr 80.8
(2.2) 		63.9
(-0.2) 		86.4
(3) 		49.1
(-2.2) 		68.4
(0.5) 		43.6
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 38.8
(2.2)
A 		21.2
(-0.5)
A 		44
(3)
A 		4.5
(-3)
A 		40
B 31
(3)
A 		24.8
(0.4)
A 		21.5
(-1)
A 		16.6
(-3)
A 		14
C 32.2
(0.6)
A 		44.3
(3)
A 		40.4
(2.2)
A 		14
(-3)
A 		30
avr 34
(2.7) 		30.1
(1.7) 		35.3
(3) 		11.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 12.6
(-3)
A 		26.5
(3)
A 		13.2
(-2.7)
A 		17.2
(-1)
A 		17
(-1.1)
A 		16.9
(-1.1)
A 		14
B 29.2
(2.8)
A 		18.5
(-0.1)
A 		26.4
(2)
A 		17
(-0.5)
A 		30
(3)
A 		7.5
(-3)
A 		23
C 33.3
(3)
A 		18.8
(0.1)
A 		23
(1)
A 		3.1
(-3)
A 		24.3
(1.2)
A 		13.9
(-0.9)
A 		30
avr 25
(3) 		21.3
(1.2) 		20.9
(1) 		12.4
(-3) 		23.8
(2.4) 		12.8
(-2.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12759
Sequence Type Exemplar sequence
Representative Public ID F48F5.2 NCBI
Target Description F48F5.2 /REP_DB=WormBase Gene ID /WP=CE18708 /TR=Q9XV09 /GB=CAB04412.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075532(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075532 NCBI Caenorhabditis elegans F48F5.2 (F48F5.2) mRNA, complete cds. 9/11 None
SNAP00000024989 ENSEMBL cdna:SNAP chromosome:CEL140:V:20438283:20445459:-1 9/11 None
F48F5.2 ENSEMBL cdna:known chromosome:CEL140:V:20443738:20444528:-1 gene:F48F5.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024993 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20443805-20444528(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48F5.2
Entrez Gene 185986 Entrez gene
SwissProt Q9XV09 EMBL-EBI
WormBase CE34030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04411 Hypothetical protein F48F5.1 [Caenorhabditis elegans] ref|NP_507932.1| F48F5.1 [Caenorhabditis elegans] 0.0
blast CAA22059 Hypothetical protein Y113G7C.1 [Caenorhabditis elegans] ref|NP_507918.1| Y113G7C.1 [Caenorhabditis elegans] 0.0
blast CAB60442 Hypothetical protein Y80D3A.8 [Caenorhabditis elegans] ref|NP_507691.1| Y80D3A.8 [Caenorhabditis elegans] 0.0
blast CAB04412 Hypothetical protein F48F5.2 [Caenorhabditis elegans] ref|NP_507933.2| F48F5.2 [Caenorhabditis elegans] 1.0E-57
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.40000009536743
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 6.6E-12
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.6E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000024989 1 960-982
Sequence
Target Sequence 
>C. ELEGANS:178959_AT
gtcattgttgcaatcttgctacaaatcaatgtcacaaaatcattcacacctgtccagcag
gatgccaatcactttggaaaaggatactccccgggccctcctgacatcccagacatcaag
gacactccaccaggacaggacacccaggatgactcgattgaccgtggaacttccgccaat
cagccaccattccctgtttcttcgtccactcgccaagacaccgctcgtcctcagctccat
gcaagacgtccttccagtctgaaagatcctcgtcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATTGTTGCAATCTTGCTACAAA 298 467 31 Antisense
TCACAAAATCATTCACACCTGTCCA 100 629 62 Antisense
TTCACACCTGTCCAGCAGGATGCCA 259 685 73 Antisense
GTCCAGCAGGATGCCAATCACTTTG 136 477 82 Antisense
CTCCTGACATCCCAGACATCAAGGA 433 235 128 Antisense
ATCCCAGACATCAAGGACACTCCAC 115 39 136 Antisense
GACAGGACACCCAGGATGACTCGAT 122 367 164 Antisense
GACTCGATTGACCGTGGAACTTCCG 222 373 181 Antisense
TCGTCCTCAGCTCCATGCAAGACGT 599 605 255 Antisense
GACGTCCTTCCAGTCTGAAAGATCC 363 377 275 Antisense
CCAGTCTGAAAGATCCTCGTCTTCC 113 271 284 Antisense
Sequence Source Affymetrix Proprietary Database