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[178958_at]

Description F46A8.5 /REP_DB=WormBase Gene ID /WP=CE10566 /TR=O01331 /GB=CAB04391.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 69.2
(-0.1)
A 		69.3
(-0.1)
A 		39.1
(-3)
A 		101.6
(3)
A 		63
B 33.1
(-1.9)
A 		28
(-3)
A 		45.7
(0.8)
A 		56
(3)
P 		28
C 42.8
(2)
A 		45.5
(2.8)
A 		25.9
(-3)
A 		46.3
(3)
A 		20
avr 48.4
(-0.8) 		47.6
(-0.9) 		36.9
(-3) 		68
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 50.8
(0.2)
A 		65.7
(2.2)
A 		50.5
(0.1)
A 		45.7
(-0.5)
A 		27.7
(-3)
A 		71.2
(3)
A 		44
B 66.8
(3)
A 		42.7
(0.5)
A 		25.5
(-1.3)
A 		9.8
(-3)
A 		51.7
(1.4)
A 		33.9
(-0.5)
A 		57
C 36.1
(2)
A 		40.2
(2.9)
P 		31.6
(1)
A 		40.5
(3)
A 		40.7
(3)
A 		13.8
(-3)
A 		27
avr 51.2
(3) 		49.5
(2.5) 		35.9
(-1.8) 		32
(-3) 		40
(-0.5) 		39.6
(-0.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 25.2
(3)
A 		15
(-1.1)
A 		10.2
(-3)
A 		14.9
(-1.1)
A 		15
B 10.6
(1.4)
A 		6.9
(-3)
A 		10.6
(1.4)
A 		11.9
(3)
P 		5
C 14.2
(3)
A 		13.1
(2)
A 		9
(-1.9)
A 		7.8
(-3)
A 		6
avr 16.7
(3) 		11.7
(-1.4) 		9.9
(-3) 		11.5
(-1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9.4
(-2.6)
A 		23.4
(3)
A 		11
(-1.9)
A 		11.6
(-1.7)
A 		8.3
(-3)
A 		17.3
(0.6)
A 		15
B 23.2
(3)
A 		14.2
(0.4)
A 		6.2
(-2)
A 		2.6
(-3)
A 		21
(2.4)
A 		12.6
(-0.1)
A 		21
C 13.4
(3)
A 		12.3
(2.3)
P 		8
(-0.7)
A 		8.2
(-0.5)
A 		13.2
(2.9)
A 		4.6
(-3)
A 		9
avr 15.3
(2.1) 		16.6
(3) 		8.4
(-2.4) 		7.5
(-3) 		14.2
(1.4) 		11.5
(-0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2472
Sequence Type Exemplar sequence
Representative Public ID F46A8.5 NCBI
Target Description F46A8.5 /REP_DB=WormBase Gene ID /WP=CE10566 /TR=O01331 /GB=CAB04391.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060482 NCBI Caenorhabditis elegans F46A8.5 (F46A8.5) mRNA, complete cds. 11/11 None
SNAP00000031219 ENSEMBL cdna:SNAP chromosome:CEL140:I:11247840:11248597:-1 11/11 None
GENEFINDER00000031227 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11247840:11253172:-1 11/11 None
F46A8.5 ENSEMBL cdna:known chromosome:CEL140:I:11247840:11248597:-1 gene:F46A8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11247770-11248528(-) 95.43 100.0
Public Domain and Genome References
Gene Title
Ensembl F46A8.5
Entrez Gene 185821 Entrez gene
SwissProt O01331 EMBL-EBI
WormBase CE10566 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04389 Hypothetical protein F46A8.3 [Caenorhabditis elegans] ref|NP_492885.1| F46A8.3 [Caenorhabditis elegans] 4.0E-87
blast AAF99967 Hypothetical protein F49F1.11 [Caenorhabditis elegans] ref|NP_500492.1| F49F1.11 [Caenorhabditis elegans] 6.0E-79
blast CAB04391 Hypothetical protein F46A8.5 [Caenorhabditis elegans] ref|NP_492883.1| F46A8.5 [Caenorhabditis elegans] 1.0E-76
blast CAB04391 Hypothetical protein F46A8.5 [Caenorhabditis elegans] ref|NP_492883.1| F46A8.5 [Caenorhabditis elegans] 9.0E-76
blast CAB63394 Hypothetical protein F46A8.8 [Caenorhabditis elegans] emb|CAB63201.1| Hypothetical protein F46A8.8 [Caenorhabditis elegans] ref|NP_492881.1| F46A8.8 [Caenorhabditis elegans] 7.0E-61
blast AAF99965 Hypothetical protein F49F1.9 [Caenorhabditis elegans] ref|NP_500490.1| F49F1.9 [Caenorhabditis elegans] 6.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492883.1 1 7-29
F46A8.5 1 7-29
SNAP00000031219 1 7-29
GENEFINDER00000031227 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:178958_AT
ggcttctggatttgtactcggaaccggtggtggaggattctccagttcctctgaagaata
tcgacataggccacgtggtgggcgagggcctaggtacgacgatggttcctccgaagatta
cagtggagggcatcatagaccaccaaggcctccaaggccaccaaggccaacacctaggcc
agtagaaaacatggagactattaatggaccgtttggaagcaattcacgtataccaattcc
tggaggatattgggatacaggcaaggtcctccgattctatggtgttcctggacaaggaag
atggtccattaacctggcccaaggaatcgtgtggctgtttcgttttgcgtcacagcctga
tctgggccgtgttgtccgaacccgtcatcaaaatggacagttcctccagggtgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTCTGGATTTGTACTCGGAACC 484 537 57 Antisense
GTGGAGGATTCTCCAGTTCCTCTGA 667 489 86 Antisense
TGGTGGGCGAGGGCCTAGGTACGAC 121 551 132 Antisense
TAGGTACGACGATGGTTCCTCCGAA 238 385 147 Antisense
GGAGGGCATCATAGACCACCAAGGC 273 517 181 Antisense
CCACCAAGGCCAACACCTAGGCCAG 28 269 214 Antisense
GCAATTCACGTATACCAATTCCTGG 128 323 275 Antisense
GAAGATGGTCCATTAACCTGGCCCA 276 337 353 Antisense
CCTGGCCCAAGGAATCGTGTGGCTG 640 265 369 Antisense
TGTGGCTGTTTCGTTTTGCGTCACA 287 555 386 Antisense
AATGGACAGTTCCTCCAGGGTGACA 56 163 448 Antisense
Sequence Source Affymetrix Proprietary Database