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[178957_s_at]

Description F01G4.4 /REP_DB=WormBase Gene ID /WP=CE03129 /TR=Q19104 /GB=CAA92765.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 47      6grp_total > 96      4grp_total > 40      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 76.7
(-3)
P 		134.6
(0.6)
P 		174
(3)
P 		114.8
(-0.7)
P 		97
B 34.3
(-3)
A 		84.8
(-1.2)
A 		205.6
(3)
P 		97.5
(-0.8)
P 		171
C 8.6
(-3)
A 		129
(2.5)
P 		116.5
(2)
P 		139.3
(3)
A 		131
avr 39.9
(-3) 		116.1
(0.6) 		165.4
(3) 		117.2
(0.7) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 85.4
(-2)
M 		44.6
(-2.8)
P 		33.3
(-3)
A 		160.7
(-0.5)
P 		194
(0.1)
P 		340.6
(3)
P 		307
B 46.4
(-3)
P 		70.5
(-2.4)
P 		53.4
(-2.8)
A 		115.4
(-1.3)
P 		167.2
(-0)
P 		289.8
(3)
P 		243
C 83.3
(-2.5)
P 		63.4
(-3)
P 		116.2
(-1.7)
P 		154.1
(-0.8)
P 		313.5
(3)
P 		271.4
(2)
P 		250
avr 71.7
(-2.7) 		59.5
(-3) 		67.6
(-2.8) 		143.4
(-0.9) 		224.9
(1.1) 		300.6
(3) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 27.9
(-0.7)
P 		29.2
(-0.4)
P 		45.5
(3)
P 		16.8
(-3)
P 		29
B 10.9
(-3)
A 		20.9
(-1.4)
A 		47.7
(3)
P 		20.8
(-1.4)
P 		37
C 2.8
(-3)
A 		37.1
(2.4)
P 		40.6
(3)
P 		23.5
(0.3)
A 		38
avr 13.9
(-3) 		29.1
(-0) 		44.6
(3) 		20.4
(-1.7) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 15.7
(-2.3)
M 		15.9
(-2.3)
P 		7.3
(-3)
A 		40.8
(-0.3)
P 		58.5
(1.1)
P 		82.9
(3)
P 		76
B 16.1
(-2.8)
P 		23.5
(-2.3)
P 		13
(-3)
A 		30.6
(-1.9)
P 		67.9
(0.5)
P 		108.1
(3)
P 		95
C 30.9
(-2.2)
P 		19.3
(-3)
P 		29.6
(-2.2)
P 		31
(-2.1)
P 		101.5
(3)
P 		90.9
(2.2)
P 		82
avr 20.9
(-2.7) 		19.6
(-2.8) 		16.6
(-3) 		34.1
(-1.6) 		76
(1.6) 		94
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178957_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10153
Sequence Type Exemplar sequence
Representative Public ID F01G4.4 NCBI
Target Description F01G4.4 /REP_DB=WormBase Gene ID /WP=CE03129 /TR=Q19104 /GB=CAA92765.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069684 NCBI Caenorhabditis elegans F01G4.4 (F01G4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000024057 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11143322:11145570:1 11/11 None
F01G4.4 ENSEMBL cdna:known chromosome:CEL140:IV:11143317:11145895:1 gene:F01G4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024047 8/11 Cross Hyb Matching Probes None
SNAP00000024049 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11143327-11145576(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01G4.4
Entrez Gene 178018 Entrez gene
SwissProt Q19104 EMBL-EBI
WormBase CE35453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92765 Hypothetical protein F01G4.4 [Caenorhabditis elegans] ref|NP_502085.2| F01G4.4 [Caenorhabditis elegans] 0.0
blast CAE69611 Hypothetical protein CBG15842 [Caenorhabditis briggsae] 4.0E-60
blast CAE69611 Hypothetical protein CBG15842 [Caenorhabditis briggsae] 4.0E-58
Sequence
Target Sequence 
>C. ELEGANS:178957_S_AT
aagtctaattctacagctgctgcatcccgtccacaagttggaaatgggaaaacaggatcc
agaccttttggaggagacactgcaccacaaagacgtggattagatgatggagccatccag
agaagagcttttggaggattgaccactgcgccagcagcagctccaaatcaaaataacttc
ccaacatttgcgacccagagaccacgtcgtaattctgactgggacgatgaagagcctcag
gcaactgatgctcctgctggaacgtttaattctgcagctgcttcattccgcccacaagtt
ggaaatggaaaagcaggatccagagctttcggaggagacactgcaccacaaacaagcgga
ttagatgatggagccatcgagagaagagcttttggagcattggccactgcgccacgagag
gtagttctcggtggagagagagcagctggccagcttcgtccacgtggcccagaaagcacc
atccaaccgcgacgtgtcccacagagtcgtcaattcggaggagtcagtgctacaagcaac
gatccgactaccccggagccgagaagaataaatgagactccaagagtgctgctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCTAATTCTACAGCTGCTGCAT 620 157 1318 Antisense
CTGCATCCCGTCCACAAGTTGGAAA 399 237 1337 Antisense
TTTGGAGGATTGACCACTGCGCCAG 622 665 1447 Antisense
CATTTGCGACCCAGAGACCACGTCG 234 215 1502 Antisense
GACCACGTCGTAATTCTGACTGGGA 422 383 1517 Antisense
AACTGATGCTCCTGCTGGAACGTTT 640 141 1560 Antisense
TTAATTCTGCAGCTGCTTCATTCCG 416 683 1583 Antisense
GACACTGCACCACAAACAAGCGGAT 331 367 1654 Antisense
CGACGTGTCCCACAGAGTCGTCAAT 609 249 1807 Antisense
GTGCTACAAGCAACGATCCGACTAC 704 479 1844 Antisense
ATGAGACTCCAAGAGTGCTGCTCCC 70 47 1889 Antisense
Sequence Source Affymetrix Proprietary Database