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[178956_at]

Description B0024.3 /REP_DB=WormBase Gene ID /WP=CE05148 /TR=Q17419 /GB=CAA94876.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_total > 25      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 251.5
(3)
P 		125.7
(-2)
P 		99.9
(-3)
P 		120.4
(-2.2)
P 		152
B 223.7
(3)
P 		82.9
(-3)
P 		93.1
(-2.6)
P 		181.1
(1.2)
P 		141
C 177.6
(2.1)
P 		125.6
(-0.7)
P 		82.9
(-3)
P 		194.1
(3)
P 		111
avr 217.6
(3) 		111.4
(-2.1) 		92
(-3) 		165.2
(0.5) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 198.8
(3)
P 		80.8
(-1.6)
M 		143
(0.8)
P 		52.7
(-2.7)
P 		44.3
(-3)
A 		58.9
(-2.4)
A 		155
B 242.1
(3)
P 		174.9
(1)
P 		119.3
(-0.6)
P 		106.8
(-1)
P 		38.6
(-3)
A 		58.9
(-2.4)
P 		204
C 104.1
(1.2)
P 		142.7
(3)
P 		47.1
(-1.5)
M 		17.7
(-2.9)
A 		15.9
(-3)
A 		106.2
(1.3)
P 		127
avr 181.7
(3) 		132.8
(1) 		103.1
(-0.2) 		59.1
(-1.9) 		32.9
(-3) 		74.7
(-1.3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 91.6
(3)
P 		27.3
(-2.2)
P 		26.1
(-2.3)
P 		17.6
(-3)
P 		74
B 71.3
(3)
P 		20.5
(-3)
P 		21.6
(-2.9)
P 		38.6
(-0.9)
P 		51
C 58.8
(3)
P 		36.1
(-1.6)
P 		28.9
(-3)
P 		32.7
(-2.2)
P 		30
avr 73.9
(3) 		28
(-2.7) 		25.5
(-3) 		29.6
(-2.5) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 36.6
(3)
P 		28.7
(1)
M 		31.1
(1.6)
P 		13.4
(-3)
P 		13.4
(-3)
A 		14.3
(-2.8)
A 		23
B 84.2
(3)
P 		58.2
(0.7)
P 		29
(-1.8)
P 		28.3
(-1.9)
P 		15.7
(-3)
A 		22
(-2.4)
P 		69
C 38.6
(2.3)
P 		43.5
(3)
P 		12
(-1.7)
M 		3.6
(-3)
A 		5.1
(-2.8)
A 		35.6
(1.8)
P 		40
avr 53.1
(3) 		43.5
(1.6) 		24
(-1.2) 		15.1
(-2.5) 		11.4
(-3) 		24
(-1.2) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11974
Sequence Type Exemplar sequence
Representative Public ID B0024.3 NCBI
Target Description B0024.3 /REP_DB=WormBase Gene ID /WP=CE05148 /TR=Q17419 /GB=CAA94876.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171528 NCBI Caenorhabditis elegans B0024.15 (B0024.15) mRNA, complete cds. 11/11 None
SNAP00000027126 ENSEMBL cdna:SNAP chromosome:CEL140:V:10292632:10294268:1 10/11 None
GENEFINDER00000027143 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10289715:10294268:1 11/11 None
B0024.15 ENSEMBL cdna:known chromosome:CEL140:V:10292886:10294268:1 gene:B0024.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10290156-10294268(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0024.15
Entrez Gene 266924 Entrez gene
SwissProt Q8MQG4 EMBL-EBI
WormBase CE31280 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.18186.1.S1_AT similar to Beta-1,3-galactosyltransferase 1 (Beta-1,3-GalTase 1) (Beta3GalT1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1,3-galactosyltransferase 1) (UDP-Gal:betaGlcNAc beta 1,3-galactosyltranferase-I) cfa
DROSOPHILA_2:1640368_AT dm
DROSGENOME1:146007_AT dm
CHICKEN:GGAAFFX.6916.1.S1_AT similar to UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1; beta-3-galt1 gga
HG-U133_PLUS_2:222969_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 hs
HG-U133B:222969_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 hs
HG-U133_PLUS_2:220829_S_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 hs
HG-U133A:220829_S_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 hs
HG-FOCUS:220829_S_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 hs
HG-U133A_2:220829_S_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 hs
U133_X3P:G4566766_3P_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 hs
U133_X3P:G10304986_3P_A_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 hs
MOUSE430_2:1422206_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOE430A:1422206_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOUSE430A_2:1422206_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOE430A:1450530_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOUSE430A_2:1450530_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOUSE430_2:1450530_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOE430B:1455234_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOUSE430_2:1455234_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MG-U74AV2:101725_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MG-U74CV2:134737_R_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MG-U74CV2:139163_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MG-U74CV2:134736_F_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOE430B:1441396_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOUSE430_2:1441396_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOE430B:1460509_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
MOUSE430_2:1460509_AT UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD44086 Hypothetical protein B0024.15 [Caenorhabditis elegans] ref|NP_741615.1| B0024.15 [Caenorhabditis elegans] 0.0
blast CAD44086 Hypothetical protein B0024.15 [Caenorhabditis elegans] ref|NP_741615.1| B0024.15 [Caenorhabditis elegans] 1.0E-148
blast CAE64782 Hypothetical protein CBG09575 [Caenorhabditis briggsae] 1.0E-145
blast CAE64782 Hypothetical protein CBG09575 [Caenorhabditis briggsae] 1.0E-144
blast CAE64782 Hypothetical protein CBG09575 [Caenorhabditis briggsae] 1.0E-106
blast CAA94876 Hypothetical protein B0024.3 [Caenorhabditis elegans] ref|NP_505645.2| B0024.3 [Caenorhabditis elegans] 8.0E-67
blast XP_624773 PREDICTED: similar to GA17319-PA [Apis mellifera] 2.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 1.1E-34
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 4.8E-17
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 1.0E-24
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 1.1E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000027126 1 7-25
Sequence
Target Sequence 
>C. ELEGANS:178956_AT
gagtcactgtcaactggcggactttcaattgaaaattgatgatgatatggcagtcgatat
ggatggattatacagaagtcttgaagataagaaacaagcaagtattaacggaattagtgg
aattatttggaaaaattcaccaccagtgagagaaaaaaaacatagatggtatgtaccaaa
aactctttattctgagaagtttttccctccatatattgatggcccaatttatttaatcgg
aaaaaatgcagttccacgaatgttggaggaagctaagaactataatcaatggatcattga
ggatgtcttctggactggagttattggcaaagctttaaaaattaaacaaatcaactgggc
taatcatcttcttcgttatgttattgagctcattccatctcgactcaaatgctcaaaagg
aggagttcctttgatctacgcagttcataatatgaaaggtccgcaaatgattcatgacgg
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCACTGTCAACTGGCGGACTTT 490 397 1023 Antisense
GAAGTTTTTCCCTCCATATATTGAT 398 335 1218 Antisense
GATGGCCCAATTTATTTAATCGGAA 225 405 1240 Antisense
GGATCATTGAGGATGTCTTCTGGAC 229 511 1313 Antisense
GTCTTCTGGACTGGAGTTATTGGCA 329 469 1327 Antisense
CAACTGGGCTAATCATCTTCTTCGT 33 187 1374 Antisense
ATCTTCTTCGTTATGTTATTGAGCT 442 31 1388 Antisense
GTTATTGAGCTCATTCCATCTCGAC 601 447 1402 Antisense
ATTCCATCTCGACTCAAATGCTCAA 507 7 1414 Antisense
AGTTCCTTTGATCTACGCAGTTCAT 28 65 1446 Antisense
GGTCCGCAAATGATTCATGACGGGT 420 501 1480 Antisense
Sequence Source Affymetrix Proprietary Database