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[178955_at]

Description F45D3.1 /REP_DB=WormBase Gene ID /WP=CE10468 /TR=Q20424 /GB=CAB01504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 0.9
(-3)
A 		1.3
(-1.9)
A 		3
(3)
A 		2.7
(2.1)
A 		2
B 1.4
(-3)
A 		2.2
(0.2)
A 		2.8
(2.6)
A 		2.9
(3)
A 		2
C 2.7
(-2.9)
A 		1.9
(-3)
A 		1.7
(-3)
A 		42.9
(3)
A 		41
avr 1.7
(-3) 		1.8
(-3) 		2.5
(-2.7) 		16.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.8
(1.2)
A 		2.3
(-0.3)
A 		2.5
(0.3)
A 		3.4
(3)
A 		1.4
(-3)
A 		2.8
(1.2)
A 		2
B 1.3
(-2.1)
A 		0.8
(-3)
A 		4.2
(3)
A 		2.1
(-0.7)
A 		1.1
(-2.5)
A 		2.3
(-0.4)
A 		3
C 2.3
(-3)
A 		4.5
(-2.1)
A 		2.3
(-3)
A 		3.1
(-2.7)
A 		3.6
(-2.4)
A 		16.3
(3)
A 		14
avr 2.1
(-2.9) 		2.5
(-2.4) 		3
(-1.8) 		2.9
(-1.9) 		2
(-3) 		7.1
(3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.3
(-3)
A 		0.3
(-3)
A 		0.8
(3)
A 		0.4
(-1.8)
A 		1
B 0.4
(-3)
A 		0.5
(-1)
A 		0.7
(3)
A 		0.6
(1)
A 		0
C 0.9
(-2.6)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		7.2
(3)
A 		7
avr 0.5
(-2.7) 		0.4
(-3) 		0.7
(-2.2) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(-1.8)
A 		0.8
(1.8)
A 		0.5
(-1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		0.7
(0.6)
A 		1
B 0.5
(-1.3)
A 		0.3
(-3)
A 		1
(3)
A 		0.6
(-0.4)
A 		0.4
(-2.1)
A 		0.8
(1.3)
A 		1
C 0.8
(-2.8)
A 		1.4
(-2)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.2
(-2.3)
A 		5.5
(3)
A 		5
avr 0.6
(-3) 		0.8
(-2.3) 		0.7
(-2.6) 		0.7
(-2.6) 		0.7
(-2.6) 		2.3
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178955_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13475
Sequence Type Exemplar sequence
Representative Public ID F45D3.1 NCBI
Target Description F45D3.1 /REP_DB=WormBase Gene ID /WP=CE10468 /TR=Q20424 /GB=CAB01504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073739 NCBI Caenorhabditis elegans F45D3.1 (F45D3.1) mRNA, complete cds. 11/11 None
SNAP00000028858 ENSEMBL cdna:SNAP chromosome:CEL140:V:12529673:12530611:1 10/11 None
GENEFINDER00000028865 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12529673:12530611:1 10/11 None
F45D3.1 ENSEMBL cdna:known chromosome:CEL140:V:12529673:12531238:1 gene:F45D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12529672-12531238(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45D3.1
Entrez Gene 185778 Entrez gene
SwissProt Q20424 EMBL-EBI
WormBase CE10468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01504 Hypothetical protein F45D3.1 [Caenorhabditis elegans] ref|NP_506140.1| F45D3.1 [Caenorhabditis elegans] 1.0E-85
blast CAB01504 Hypothetical protein F45D3.1 [Caenorhabditis elegans] ref|NP_506140.1| F45D3.1 [Caenorhabditis elegans] 5.0E-71
blast CAE68307 Hypothetical protein CBG14001 [Caenorhabditis briggsae] 1.0E-9
blast CAE68307 Hypothetical protein CBG14001 [Caenorhabditis briggsae] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:178955_AT
caagaattatgcagttcttctcgaatcagaaaatttaaacattgtacgttgcgcagttaa
atggttgctggaatcagatgtatcactggagttgttgattaagtacgatattggaaattt
agtagaaaagaaatttctgatcactgataaactggcccgaaatttgattttaaaaattag
aaatttagaggaagaagagtttggagacaacgatattgagatgttcattaccccaaattc
cagtttgaaacataattcatcgcctgaaagcttgaacaacagtgacttcagttttagatt
aactaatctttctcctattgaaaaatcggatatcaacccatcacgaaaaagtaaaaaatc
aaggggtccaatcaatagaaaattgaaatatacatacatcatggctaaggctgatttttt
tgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAATTATGCAGTTCTTCTCGAA 400 185 45 Antisense
AACATTGTACGTTGCGCAGTTAAAT 286 137 82 Antisense
GTTGCTGGAATCAGATGTATCACTG 612 439 108 Antisense
CTGATCACTGATAAACTGGCCCGAA 146 237 181 Antisense
TGAGATGTTCATTACCCCAAATTCC 686 567 261 Antisense
TCATTACCCCAAATTCCAGTTTGAA 285 613 269 Antisense
TCATCGCCTGAAAGCTTGAACAACA 516 619 301 Antisense
GAACAACAGTGACTTCAGTTTTAGA 543 349 318 Antisense
GATTAACTAATCTTTCTCCTATTGA 32 431 341 Antisense
AAATCGGATATCAACCCATCACGAA 117 119 367 Antisense
CATGGCTAAGGCTGATTTTTTTGTT 387 209 444 Antisense
Sequence Source Affymetrix Proprietary Database